G97831


Basic Information

Item Value
gene id G97831
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11396116 ~ 11477114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116033
tattattattattgttattattattattaagtgactGCACTGCACATCCTTATGGCACAGATACACCaatatgaaagaaaacaatGCATGCAAATATTTCCACAGTGCTCTGGCATACCGAAATGGAGTCTTATGCATGGAAATTTAGTGCATGGAGACACAGTTGACTATACACAAAATCagtgaacataaacatttttcaaaaccaTTTGTACAAACACTAAAACATTGTACATATAGTGCTTTAAAtgcatataatataaaatgaatatgtaCAGCTTATGAACTGGATTTACAGTCACATCTCTCACATATGCTCACTTAAGCTTTACTTTAAGTAAGCACTACAGCCTAACATACAGGGCACATATTATAGTAAAGTGATACGAGCAGATAAGCAATATCTAAAAAGTCTTAACTACTACCATTTGGACTACATCCTGCTGGCAGCCTGAGGAGAGATGTGTGCTTCTGCCACTGTAAGTGTGGCTCGTCACTGTTCTGTTTCTGAATCTTGCATCCACTGCTTGATCCTGGCTCTTCAGTATGTCGCTTTAGCGTAGCT

Function

NR:

description
PREDICTED: glutathione S-transferase P-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116033 True 565 lncRNA 0.36 2 11396116 11477114

Neighbor

gene id symbol gene type direction distance location
btbd11b btbd11,btbd11b,LOC107553977,LOC107664686,LOC107730921,LOC107672238,LOC107583829 coding downstream 13525 11320829 ~ 11382591 (-)
mlc1 mlc1 coding downstream 77924 11308950 ~ 11318192 (-)
panx2 panx2,LOC107583834,LOC107730920 coding downstream 89075 11293326 ~ 11307041 (-)
trabd trabd,LOC107583835 coding downstream 106064 11280607 ~ 11290052 (-)
selenoo1 selenoo coding downstream 116147 11271252 ~ 11279969 (-)
rfx4 rfx4 coding upstream 12528 11489642 ~ 11506690 (-)
polr3b polr3b,LOC107664690 coding upstream 31661 11508775 ~ 11535664 (-)
endouc LOC108264851,LOC108425714 coding upstream 60128 11537242 ~ 11542381 (-)
ppfibp1b ppfibp1 coding upstream 66546 11543660 ~ 11576988 (-)
si:ch211-245j22.3 si:ch211-245j22.3,LOC108264234,LOC105895582,LOC104937698,LOC107749310,LOC108425778 coding upstream 101131 11578245 ~ 11581884 (-)
G97607 NA non-coding downstream 205276 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 208093 11187495 ~ 11188023 (-)
G97246 mlycd non-coding downstream 735064 10657192 ~ 10661052 (-)
G97225 NA non-coding downstream 875119 10520795 ~ 10520997 (-)
G97224 NA non-coding downstream 876811 10519097 ~ 10519305 (-)
G97932 NA non-coding upstream 203615 11680729 ~ 11696665 (-)
G97931 NA non-coding upstream 213883 11690997 ~ 11693079 (-)
G98342 NA non-coding upstream 797161 12274275 ~ 12275411 (-)
G98343 NA non-coding upstream 798608 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 1000789 12477903 ~ 12478277 (-)
pdf pdf,spata2l other downstream 216508 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 814214 10527110 ~ 10581902 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 1101293 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 1477635 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 1624096 9750882 ~ 9772020 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 108943 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 275411 11752525 ~ 11769986 (-)
sspn sspn other upstream 393794 11870908 ~ 11878204 (-)
admb NA other upstream 834708 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 919393 12396507 ~ 12405281 (-)

Expression


Co-expression Network