G97932


Basic Information

Item Value
gene id G97932
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11680729 ~ 11696665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116158
TCATCCTCCCGGTCGTTCTTGAAGCACAAACACGCGGCCCGTTTTTTAAAGCCTTCTCCGTCGTACGTCCTCGTCTGATTGGGCTTGAACTTCATCATGTATTCCAGATTGCTGAGGTTCTCCATAAGCAGAAGAAAACTGTTTCTGGTGCTCTTCTAGGCGGATTTCCGCCGAGGTTTCCTCTCAGACCAGTAAAACCAAACCGCCCCTGAGTACTCCGGGTTCTTCATGCACTGTGCATCTGCGGAGCTTCAGGAAGAGCAATCCTCGCGCTCTTGGTCTCTTCCTCACCATGGTGCCTCGTCTCTGAGCTCCGCGCGCATCATGTCCGACTGCGCTCCTCGCGCTTCACTCGCTGTTCCTCCCGCACACACTGCGCAGACGCACTGGCACACGCACTGGCACACGCACTGAGCGGACTTCGGGAAATCTGAACAGGCAGGAAAACGCAGCACGAGACGAGCAAACAGTCGGGCGACACGAAATTAAGTGGGAACTGCTGTGGCAACAGACTGAGATCTGTCCAGACTTGTATCCCCAGTCAgagattccagctcctcctgggggATCTACAGATGTTCCCCTATATATTATCTCTCCAGCGGGTTCTGGGTCTGCCCCAGGGTCTCAGTCCTGTGGGACTTGCCTGCCAGAGCTGTAGCGGGAGCCAACCTGGGTGGTCCCACTAATAAGGTGCCCAAACCACCTTGATATGGAGGAGCAGTGGCTGTTCTCCAAGGCTCTCCCAGATTGGTAAGGTCCTCACCCTGTAATGGAGAAAAAGCCCAGCAACCCTGCAGAGGAACTTGATTTCTGCATCCTTATTTTTTTGGTCACTTCCCACAGCTCATGGCCAAAGGTGAGGACAAGGACATACACTGAGTGGTAAACAAAGACCACTGTTCACAAACTGTGCTTCTGCTTCACCATCACAGACTGGTACAGTTACAGGAACACTGCTACCATTAACCCAATCTATTTGTTCCACCTAAATCCTACCAACCATCAGATGAAGTCTTCTCTCCAGAACCCTGCTGTAAACTGGGCAATCGAGGAGTGTGATTGTCCTATAATTGGAACACACAGTCTTgtcccatttttaaaaatagggaCTACTATGCCAGTTTTCCAGTGCCTTGGTCCAAAGGCACTTCCCTGTGCAACATTTACGAGGCGTGGTAACCACAGCTCCAACCCTGCCAAGTGCCTTCAACATCTCTGGCCAAATCTCATCCACCCCTGCAGCCTTGGCGCTCTTTATCCGTCACAGTAACATCCCTTGGTCACGGAGATGGACTTCAAAATGCCAGATTTCTTGCACTGCCTCCTGAAGAGAAAGCATGTCCCCTGTGTTAAGGAGGTCCTCAAAATGCTCCTTCCATTGCTTAATACTCCCTCACTTGCTCAGCAAAGCTTGTGCATGGTACGATGAAAGATTTGATTCAGTTGAATACACTAAATAGCTGTTTGTTTCAGTAATTTAAgctttttaagaaatattataaCGCATCAAAAGAATTCCTTACTCTAATAATTTCCTGGAATATTTCTGGGTTACCGATGTATAACCAGCCAAAAACATGGGCAAAAGTACGTGGACACCAGAGCATCGCGCACACGTGGGCTTGTTGggcatcccattccaaaaccatgggcattcatgtggatttttttctaggcttgtgtgcagctgcttggccatggaAACCGATTTCATGAAGCTCCAGACGCTCAGTTcatgtgctgatgttgcttccgGAGGCAGTTTGGAAGAGATGCCAGTGACGCAAATGAGCAATGCAACAGAGGCTATGCAATGTTTATGCGCTATGCACTTAAGCACCCCGTtctgtgagtttgtgtggtCTATAGCTTCgtggctgagctgttgttgGACCTAGTTGCTTCCATTGCACAATAATAGCACTTAGAGTTGGCTGATGCAAGAATTTCACAAACTAACTTCAGTATGACCCATTCTACTGCCAATGTTTGTCTACAGAGTTTGACCTGTTAGCAAAGGGTGTGGCTCAAACACCTGAACTCAGTAATTAGGAGgagtatccacatacttttggccatatagtgtaactacTTCTTCTCTCAAAGTGCACATGGCAAGCTGGCTTCAGCGGAAAAAACGACATCTCACTCCCCAGTAATCGTTCAATGCCATTTAatcacgttaaaaaaaaatgcatttgccAGTCACTGACAAGTAGATAATAGTGTCATAATTAGTACAAAGTTCTCCACAGAACAAAGAATTTAAAGCCAGGCCATGCACATAGTCACAATTTCTTTGTGTACTCTTTTACAGAATGTTGTAGCTAAATGATACATTTTCTCTGAAAATGACAACTAGAGATGGTGGTAATGCACTAATGCATCATTTCACAGAATAGAATGGGTCGTGCTCTGTTCTTCctcaaaacaataaaacttaATGGAGGGATGCTAATTATTAAACACCAAACATTGGGTTAAAATACCCTAGTAGTTATCTGGGCTCATGATCTCTTCAACCTTCACAAGAGCCACAAAACTGCAAAGCATCCCCAcagtttacagtggatatacaGGGGTGCGTTTCCTCATATGCAGTTCAATACATGGAGTTTTGTTGCCAAAAGGTGTTCATGGTGAAAAAGCTTTTTTCGGACTCGCCTAATCACAACACAAAATGCTGTTGCCGTTCCAATGGCAGTTACTTTAAAGGCTGCATTTTTAGGCTTCTTTTAGGAAGGGCTTCAACTGTGCAATCCCTGACATTCTTAAACCCTGAACCCCCCACCCTCGAACTTTTTAATGGCTTAATTGATTGTGtgatttcaatatttattacCTGACTTGGCAGGTTAACAATCATCAGTCTTTTTTGTTGAAATATGCTTGGTTCTCTCTGATCATGGAACAAAGGGTGTTTATGCGTGCAACCTCATAATTCAAAGGCGTCAACTAAATTCCTGAAGAATGAAAATGATCGAaaagtagatttttttccccaaacgaTAACAGTAATTATTGTGTTTCTATACGTTTCTGCGAGAATTTTTTTGGTTCAACAAATAAAGACGtattttctccactttgttGAGTGGAAATTTTTAATAACTGAAGTTTATTTTCTAATAGAAACAATTTTTATTGAGAGCAACAGCTGAGTGTCTTCTGCATACTGACAGGCACATGCAGAATGTGACTTCAGCTTCAAACAAATTTACATGCAGCGTTTATACTTCTGCTTATTGCAATGTTGTAAGTTTGTGCACGAGTGTGTCTTATCATACAgcaatatttatgtaaaatatcgCTTATTAAACTATATTCGATTTCATGCCAAATAGTCCTATCAGTGCTTGATGTTTTATTGGCCTGATGAATGTTATCCCAGGCAAACATTTGTGGTTAACTTGAAATATTGTAACCTGTAGACTACATATTTGTGATCTGTAGTGGAGCTGTAGTTCCCTTTTTAATGGGAAATAACAAATTACGACACTTACTGCACCTTACATTTTGACAAACAGGAAAATCCAGAATGTGTTTTTAGAAGGTGGCTTTTTCAGCTGGTTCAGTAAGCTGCTGATATAATGGtcaccagcattttttttttttacttcactcatccataaaaagaaaaaactctacTCCCTATTGACCTTTGCAAAAGAGAACTTTTTATTTGACTGGTTTCCTAAAACATAACAAGCTCCAACTAATTGTATACACAGCCACCTGCTGCACTCCACGTGTGAACGGACAACATGTCCAACTGTCAGTAAGCACTATTTTACTAAGCACTTTAATCAGTCTGTGTTAGGCAATTTTCCAGAAACAGGAATATGAAACAGAATGACAAAACACAGTACAGTGCAGCACAAAAGCCGTTATATAATTCTAATGCTAGCACGGTCACCTTGCATTTAAACTTCTttgtgtgaaaaatgaacacatCTGACAGactcaaataacatttttatgtgcAACGAGATAAAACAAAAGACTAtggttttatataaaataaccaATTACTCACTTATGTTCCATAACCTATTAGCgtattaatgcacataattagCTTGTCATACTTTTGAGTTAAATGACGTTAGTTGATGCCTTTTAGCCTGGTTAATTGGGCGTGCATTACATGGGACTGGGCAAGTACGCTGGAACGTTCAGGTGCCTGCTAACatataataaattcattatctTTGTTCCACACCTGAATATTAAACTGGCAAAGGTCTTCAATTCAGAATTTTTCATGTttacttacactatatggccaaactttgcagtcacctgaccatcacacacacgtgcttgttgaacatcccattccagatgtagtcccttCTTTGCTTTTATCATAACCTCTAGTCTtatgggaagactttccactagattttggaacttGGCTGTGGAAATTTGTGccaattcagccacaagagcattagtgaggtcaggcaatgaTGTTGGACAAGGAGACCTGACTTGCAATCAGCGTTCCAGTCTGGCAAttgatttcttccactccaactttggtaAACCTTGTCTTCAttgacctcgctttgtgcacaggagcattgtcatgctggaacaggtttcagcatCTTAGCTCCACTGaaggaaatcttaaagctacagcatacaaagacatcctatacaattgtgtgctctcaactttgtggcaatactCTGGGGAAGGCCTACATAtgcgtgtgatggtcaggttccacatacatttggcaaTATCGTGTATGTATCACTGTTAAATTTGCTTGCAGATATTCAGCACTGTAAACTTAAAACTGCATGCCAGATacagtttaaatattaaaagttaTATTCAGTGAACCCCCAATCATCAATGAAGCATAGCCACAGGGTCTGCGATttggttacagtggtagaaatcacaacccacacttaccaaagttattatatttattattgggTTCTTAGAGTTATTAGTCTTTGAGAGGTTATGGGAATTTAATAGGCaataatccaaacctcaataacacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116158 True 5032 lncRNA 0.42 3 11680729 11696665

Neighbor

gene id symbol gene type direction distance location
si:ch211-219a15.3 LOC108264201 coding downstream 4876 11672381 ~ 11675853 (-)
si:ch211-245j22.3 si:ch211-245j22.3,LOC108264234,LOC105895582,LOC104937698,LOC107749310,LOC108425778 coding downstream 98845 11578245 ~ 11581884 (-)
ppfibp1b ppfibp1 coding downstream 103741 11543660 ~ 11576988 (-)
endouc LOC108264851,LOC108425714 coding downstream 138348 11537242 ~ 11542381 (-)
polr3b polr3b,LOC107664690 coding downstream 145065 11508775 ~ 11535664 (-)
slc6a15 slc6a15,LOC107553966,LOC107740320,LOC107672330,LOC106573109 coding upstream 208943 11905608 ~ 11926257 (-)
rassf9 rassf9 coding upstream 339309 12035974 ~ 12047751 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding upstream 370365 12067030 ~ 12191361 (-)
LOC113534448 NA coding upstream 570668 12267333 ~ 12269117 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding upstream 585632 12282297 ~ 12303697 (-)
G97831 NA non-coding downstream 203615 11396116 ~ 11477114 (-)
G97607 NA non-coding downstream 489889 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 492706 11187495 ~ 11188023 (-)
G97246 mlycd non-coding downstream 1019677 10657192 ~ 10661052 (-)
G97225 NA non-coding downstream 1159732 10520795 ~ 10520997 (-)
G98342 NA non-coding upstream 577610 12274275 ~ 12275411 (-)
G98343 NA non-coding upstream 579057 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 781238 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 1015429 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 1031779 12728444 ~ 12729493 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other downstream 69765 11586057 ~ 11610964 (-)
pdf pdf,spata2l other downstream 501121 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 1098827 10527110 ~ 10581902 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 1385906 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 1762248 9822233 ~ 9918481 (-)
plekhg7 plekhg7,LOC107583891 other upstream 55860 11752525 ~ 11769986 (-)
sspn sspn other upstream 174243 11870908 ~ 11878204 (-)
admb NA other upstream 615157 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 699842 12396507 ~ 12405281 (-)
akip1 LOC108264820 other upstream 723772 12420437 ~ 12423978 (-)

Expression


Co-expression Network