sspn (sspn)


Basic Information

Item Value
gene id sspn
gene name sspn
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11870908 ~ 11878204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116261
AAGTTTAAACACCCTATCATGTAACAAACTTCTGAAGAGTACTATATATTCAATGATTCGTACCAGTACAGCAGTTATACAGAGTGTTTCTGCAAACAATGCTCAGAGTGTATGATTTTTGAAGTTTGGCA
>XM_026927130.2
AGTTCAGAGCCCTCTTTGATTCCAAATAGCTGCAGCCGAGCAGGCTGGCTCGGAGAGGAGCCCCCGGCAAGGAGGGGAGGAGTAGGGCAGGGCAGGGGGGTGGTAAACAGTACACTGGGCCAGTCAGGgaaaggagagaagaagaaaaacaggagacaaaaagaggaaaagggGTGAAGAGAAGTAAGAagtaaagaaacagaaaattcTAGGTTTGAAGGAAGAGTAAGCCACTGTGCTTGAGGAAGGAAGACGGGAGGAAGCATGGGGTCAGAGAAGAGTCAAGCGGGGTCTAGTGGAGGGCAGAAGAAGGCCAAGCCTGATCGAGGAGGCCTAGACTCCGAGGGAAGCCACACATGCTGCGGCTGCCGCTTCCCGCTGCTCATCGCCCTGCTGCAGCTGTTACTGGGCATCGCCATCACGGTCGTGGCCTTCCTCATGACCACCATCAGCCCCTCTCTGCTGGCCAGGGAGACACCCCATTGGGCTGGAATCATTTTGTGCGTTGTATCTGTCCTGGGCTTTGTGCTCTATTTCATCACCTATCTGCCTGATGAGAGGACCTACACACAATTCATCATAAAGCTTGTGTACTTCCTCCTGTGTTCAGTGGGGCTAATCATCTCCATTATAGTCATCGCCTTCCAGGGCCACCACTACTCTTTGACCAATGGCTTCATATGCAGGGAGATACGTGAGGATTGTATCTGCACACTAGAGCCAGAGGACCCCATCGCGCGCACCTTCACCTACGCTGAGGTGACAGACTGCACTGCCGTTACAAGCACTCTCATGCTGTACTACCTGCTGCAGATGGTGTTGAACCTGTCTCAGGCCATTGTCTGCTTGCTAGGAGCTTTCATCATGTGGAAGCACCGCTATCAGGTGTTCTTTGTGGGCTTGCAGTTGGCTTCACCCTCCACTCAGCAATGGCAGAAAGTTTAAGAGCAGGGCAGGGACAGCGGCTTGGCACTGGGAGAAGGGACGAAAAGTTCTCCTGGGAGCAAAACATGTGGAGCAGTTGAGTGTGTTGAGGGAAAGTCCACAGCATGTCTATTTGTGTGAGTGTACAGCTGAAGATACATTTTGCATGGCGTAGCAGTAACATACTGTACAGTGGTGGCAAATTACagttttctgtccttttttagGGCTcctgtatttttctgtattgGCGTCTGGACATTTCCactaatataaatgtatacttGCTTTTGCCAGTGCCAAGAAGGATATTCTTATCTAACAGGCTGTATGTGTGATCCAATAGGACAGCTGTCATTCTGGGAGAGCTAAATAGCCACTCTGTTTGCATAGGATTTGCATATCAGACTTATGGACTTAATAGTTAGCAGTTATATGACAAATCCCCACTGTTACCTTCTCAACAAAAAAGTATTGGTAACTGTTTTACGTCTGAATATGTCGTTTTTTAATCCGCTTGTTTTCCTTAAGGCAGTGGTGCTTAAAAAGGGGTCTGTGATGTATAGCCAGAGGATCCTCCGTTTTATGTAAGTGTGTGATCATAGTAGAAATCACTATTAATTTGTTATAGTTAGCTACTATTGTTTTAGTTTATTAGCCCAAGTAAAAAgtcacttgaattaaatgaaacataCTAATGTGTTTTAAGGAAGTTGTCCATATCACAATCCAAGTCTAATCTAATGTCAGAATCTAACCACAGTGTTAATAAAACATGCGGTTTAAGTgctgtttatacagtatattacagcatgtttaatcattttaacaacaacaacaacaacaaacgaGACAGGGTGCAACAAGATTGACACACCCGGGCTTAAAGTTTgttaaatattgcaatattaataCTGTATTATGGTTGAttataatcatgtttttttttcactttttttaaagcagctgccctttatattttttatatgttaCATTTTGATGAATATAACATTGTTTTTCTGATATTTGcatactttttgtatttttctatgctcaaaaacatcatttaatatcTTCCATTGTGTAGCAGTCAAACCCAGACTGTCCTTAGTTTGCTTTAGTTACAATCATTGCTTAGACTGTCTTATTGGCAATAATAAGTATAAGATCGCTAACAAAAATAGTCCTGCACGCAGACAGACAGTTGTAAATCATGTCCAGTAAAAGGACAGGCTTGTGGTCTGAAGTCTTTGCTTGCACAGTGGATAAACAGCAGTGCTACTGTCAGCAGCAGAGAGACTGGGGGTCAGAGACGGGGGGTCAGAGGGGGTACTCAGACACACAGCGGGTCACTGCCTGATCATTATAACTGGTTTTACACTAATGTTCTTGTtacatatataacaaatatagtATTGACAAGTTTAAACACCCTATCATGTAACAAACTTCTGAAGAGTACTATATATTCAATGATTCGTACCAGTACAGCAGTTATACAGAGTGTTTCTGCAAACAATGCTCAGAGTGTATGATTTTTGAAGTTTGGCACTTTGAACACAGGTTGAGAGAGGTGTACTTACAATGTGTGCTACATGCTACATgcctgaggtaaaaaaaaa

Function

symbol description
sspn Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Predicted to be active in sarcolemma. Orthologous to human SSPN (sarcospan).

NR:

description
sarcospan

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22194 SSPN; sarcospan

RNA

RNA id representative length rna type GC content exon number start site end site
TU116261 False 131 lncRNA 0.34 1 11870979 11871109
XM_026927130.2 True 2546 mRNA 0.43 3 11870908 11878204

Neighbor

gene id symbol gene type direction distance location
si:ch211-219a15.3 LOC108264201 coding downstream 195055 11672381 ~ 11675853 (-)
si:ch211-245j22.3 si:ch211-245j22.3,LOC108264234,LOC105895582,LOC104937698,LOC107749310,LOC108425778 coding downstream 289024 11578245 ~ 11581884 (-)
ppfibp1b ppfibp1 coding downstream 293920 11543660 ~ 11576988 (-)
endouc LOC108264851,LOC108425714 coding downstream 328527 11537242 ~ 11542381 (-)
polr3b polr3b,LOC107664690 coding downstream 335244 11508775 ~ 11535664 (-)
slc6a15 slc6a15,LOC107553966,LOC107740320,LOC107672330,LOC106573109 coding upstream 27404 11905608 ~ 11926257 (-)
rassf9 rassf9 coding upstream 157770 12035974 ~ 12047751 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding upstream 188826 12067030 ~ 12191361 (-)
LOC113534448 NA coding upstream 389129 12267333 ~ 12269117 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding upstream 404093 12282297 ~ 12303697 (-)
G97932 NA non-coding downstream 174243 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 177829 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 393794 11396116 ~ 11477114 (-)
G97607 NA non-coding downstream 680068 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 682885 11187495 ~ 11188023 (-)
G98342 NA non-coding upstream 396071 12274275 ~ 12275411 (-)
G98343 NA non-coding upstream 397518 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 599699 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 833890 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 850240 12728444 ~ 12729493 (-)
plekhg7 plekhg7,LOC107583891 other downstream 100922 11752525 ~ 11769986 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other downstream 259944 11586057 ~ 11610964 (-)
pdf pdf,spata2l other downstream 691300 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 1289006 10527110 ~ 10581902 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 1576085 10266978 ~ 10294823 (-)
admb NA other upstream 433618 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 518303 12396507 ~ 12405281 (-)
akip1 LOC108264820 other upstream 542233 12420437 ~ 12423978 (-)
G98770 NA other upstream 1167619 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1672476 13550680 ~ 13562574 (-)

Expression


Co-expression Network