G98342


Basic Information

Item Value
gene id G98342
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12274275 ~ 12275411 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116615
ATTGAGCTCTACCTCTAAAGGAAAATCCTTTTCCAGAAGGGGGCTGCTTATCTGTTTCATTAGACGAAATGGTTGCAGAAGAAAGGTTAGTGAATGGATGTGAGGAAAGATCTGTAGAAGAGAAAGAAGTAGAAAATGAGGAGGAAATGGAGGGCTGGTATCCAGCACTCGGTAGGGAAGTAGAAGGTGGGGTTGTTTGAGAGCTCTTTGTGGTCATAGGGGCAACAGTGGAAGAAAATATTGTAGGTATCACAGAGGTGCTGAAACCAGTAGAAATGGGTTGTAGAGATGGCGAGGAACCAAGGAAACTTTCGTTAAGCcgagctgacagaaagaacGATGGGGAGGTTGTTTTAGCATCAGTCCTCCCATCAGACACTGTCGTCATATTTGGGGTGGTGGATGTTGTTGCTTTGGTTTGACCTGCAGGTCATAGGACATGTATTTAACCTTAGACATGTCAGAGatataattacaaataactgtaaacaaaaagaacataataataataataataataataataattttaaattacgATAAACCTGTTGAACTGGAGCAAAACACATCAAATAATCGGCTAGGAGGAGTAGCCCAAACAATGATTCCAACTTTATTTTTGCCACAGTTTGGATTTTTCTCAGTCCGAGGAATAACAGCAATTTTCTCCATAACCCAACCATATCTGCAAAGCATAAATATAGGCTAACTTGAACATAACAGCATTAATTATGATGTCATTTACTTAAATGGTACATTTGGTTATCCATTAAATGTCAACCCATTATCCTCAATTAATGTGTTTAACTATACCTGCAGGTCTGTAAGCCATTGCTCTGCGCAGTTTCCACTTGAGCACGGGTGGCTATACTAACACCTAGACTTGTACATACATCTATAGCTGTAGTGGCATTAAAGCTGTATGGTTGGTTCTTGAGCTGGGCTATAAATACTTCAGAGATTCCGCCTTTTTCTGGATAAACTGTAAAATCCCAAAATGAAAGCCATTTAACAATGCACTGAGCCAATACAAGCTCCAAAAAAGCAACTTGATACATATAGGACTACAGCAATTATTGCAATAAAAGTCATCAACATGGTTCTTAGGAGCTATTTTTTCATAAAACCTTACATTCC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116615 True 1137 lncRNA 0.38 1 12274275 12275411

Neighbor

gene id symbol gene type direction distance location
LOC113534448 NA coding downstream 5158 12267333 ~ 12269117 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding downstream 82914 12067030 ~ 12191361 (-)
rassf9 rassf9 coding downstream 226524 12035974 ~ 12047751 (-)
slc6a15 slc6a15,LOC107553966,LOC107740320,LOC107672330,LOC106573109 coding downstream 348018 11905608 ~ 11926257 (-)
si:ch211-219a15.3 LOC108264201 coding downstream 598422 11672381 ~ 11675853 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding upstream 6886 12282297 ~ 12303697 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding upstream 88148 12363559 ~ 12385353 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding upstream 113462 12388873 ~ 12395662 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding upstream 183104 12458515 ~ 12463241 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding upstream 190735 12466146 ~ 12476898 (-)
G97932 NA non-coding downstream 577610 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 581196 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 797161 11396116 ~ 11477114 (-)
G97607 NA non-coding downstream 1083435 11190641 ~ 11190840 (-)
G97601 NA non-coding downstream 1086252 11187495 ~ 11188023 (-)
G98343 NA non-coding upstream 311 12275722 ~ 12276229 (-)
G98383 NA non-coding upstream 202492 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 436683 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 453033 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 463538 12738949 ~ 12742224 (-)
sspn sspn other downstream 396071 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 504289 11752525 ~ 11769986 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other downstream 663311 11586057 ~ 11610964 (-)
pdf pdf,spata2l other downstream 1094667 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 1692373 10527110 ~ 10581902 (-)
admb NA other upstream 36411 12311822 ~ 12345452 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 121096 12396507 ~ 12405281 (-)
akip1 LOC108264820 other upstream 145026 12420437 ~ 12423978 (-)
G98770 NA other upstream 770412 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1275269 13550680 ~ 13562574 (-)

Expression


Co-expression Network