admb


Basic Information

Item Value
gene id admb
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12311822 ~ 12345452 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116624
GGTAGTGTCACAGCTGCATCCTTctctaactaacacacacacacacacacactggacattaTTTGGGAAATCCTATTTCTCTAGACCAACCAATCAGTGTTGAGAAGTCAGGAGTACAGTTCTTGATTCTTACTCAAGAACAAAGCTTCTCAGGTTGAAGTCAAAATGAAGAAGGTCTCTCAGAGTATTATGTTTTGGTGTTTGCTGGCTGCCTTTGTGCCTTGTGTTATAAGTGCAACACTTCCTCCCAATTCTGATGGAGAAAAGAAATTGAATACAGAGCTTCAGAAGAAGGATCTCTGTGTGCATAATAGGAGTTCAGAAGATTCAGTCGAGAACAGGGATACAGGGACACCTGTATCACAGAACAGTGATCAGCCAAGTGGAAGGATGAAACGGGGCTGTAACCTGCTCACCTGCTCAATACATGATCTAGCCTACCGCATCAACCAGCTCAGTAATAAGACAAATAACGCTCCCCAACGCAAGATCAGTCCCTGTGGCTACGGCCGGCGACGGAGGCGTTCCCTCCTCCGACGCTCCACCGCTCCAGCCCAAGGGGAGGGCCATCTGAATCTCTCCACACTTCAAGCCCAGAGACGTGACTCGCCTCAAAAACTGACTTAAGCCTCAATCTGCGGTTTGTCCTGAGCCTTTTTCTTATGTTGGCTCAGTTTGCTGAAATACTACTGACAACTCCTTTGCAGGCACAAAAATGGGGAACTACCATGTCCAAACAGCTGGAACCTCTTTCTCCATCCTTTACCAGAGAGACAGGACTAAAGATAAGGATTCGGGTCATCTGGAAAGAATGATTGTTTGTGTAAAGTGGGTCAGGCAGTTCTGTtttgtaagaaaaagaaaatcaggaGTTCAAGTGAGATAACAAGGGTGTGGGTTTATGGCAGCGATATGAAAGATACTTGAGCAGTTGTGTGTGCATTAGTTTGGGATAAGTCTCGATCTTACGGAACTCTGGGACCTGACAAGGCTCCCTGTCTCTCCCCAACGCAGGACATGCCACTTCTTCAAACCTCTGGAGAAGCAATGAGGTTATCCAGGAAACTACCAGCACCTCTGTTTTTTCTAGCAAGGGGAAAGAggacagagaaacacaaataCCAGCTAAAAGACTTTCACCAATAAGGCTCCATAAGGGAAATTAACTGAAAGAAGAGGTCTTTGTGAAAGCTGGATGTGAAAAGCTTGGACACTAATATCTGCTCACCTGCTTACATACTTGAAGCTGGATATGTGTATAGTGGGGGAATGTGCAATAATTGTAGCAGTATGTATTCCA
>XM_026927614.2
GTCACAGCTGCATCCTTctctaactaacacacacacacacacacactggacattaTTTGGGAAATCCTATTTCTCTAGACCAACCAATCAGTGTTGAGAAGTCAGGAGTACAGTTCTTGATTCTTACTCAAGAACAAAGCTTCTCAGGTTGAAGTCAAAATGAAGAAGGTCTCTCAGAGTATTATGTTTTGGTGTTTGCTGGCTGCCTTTGTGCCTTGTGTTATAAGTGCAACACTTCCTCCCAATTCTGATGGAGAAAAGAAATTGAATACAGAGCTTCAGAAGAAGGATCTCTGTGTGCATAATAGGAGTTCAGAAGATTCAGTCGAGAACAGGGATACAGGGACACCTGTATCACAGAACAGTGATCAGCCAAGTGGAAGGATGAAACGGGGCTGTAACCTGCTCACCTGCTCAATACATGATCTAGCCTACCGCATCAACCAGCTCAGTAATAAGACAAATAACGCTCCCCAACGCAAGATCAGTCCCTGTGGCTACGGCCGGCGACGGAGGCGTTCCCTCCTCCGACGCTCCACCGCTCCAGCCCAAGGGGAGGGCCATCTGAATCTCTCCACACTTCAAGCCCAGAGACGTGACTCGCCTCAAAAACTGACTTAAGCCTCAATCTGCGGTTTGTCCTGAGCCTTTTTCTTATGTTGGCTCAGTTTGCTGAAATACTACTGACAACTCCTTTGCAGGCACAAAAATGGGGAACTACCATGTCCAAACAGCTGGAACCTCTTTCTCCATCCTTTACCAGAGAGACAGGACTAAAGATAAGGATTCGGGTCATCTGGAAAGAATGATTGTTTGTGTAAAGTGGGTCAGGCAGTTCTGTtttgtaagaaaaagaaaatcaggaGTTCAAGTGAGATAACAAGGGTGTGGGTTTATGGCAGCGATATGAAAGATACTTGAGCAGTTGTGTGTGCATTAGTTTGGGATAAGTCTCGATCTTACGGAACTCTGGGACCTGACAAGGCTCCCTGTCTCTCCCCAACGCAGGACATGCCACTTCTTCAAACCTCTGGAGAAGCAATGAGGTTATCCAGGAAACTACCAGCACCTCTGTTTTTTCTAGCAAGGGGAAAGAggacagagaaacacaaataCCAGCTAAAAGACTTTCACCAATAAGGCTCCATAAGGGAAATTAACTGAAAGAAGAGGTCTTTGTGAAAGCTGGATGTGAAAAGCTTGGACACTAATATCTGCTCACCTGCTTACATACTTGAAGCTGGATATGTGTATAGTGGGGGAATGTGCAATAATTGTAGCAGTATGTATTCCATCAGTAatggcataaaaaaaaagtaaaaaaaaaaaattatgaaaaataatgtatgttatggattcatatttttatacattcagTAATAATATACTTGTAATCTCAGAGATTAACTATTTTTATACAGGAACTAATATGGGTattgtatattaaaattaaataaccaTTACTTTTATACTGATTTAATGATAAACTTATGTTTATGTCAAGACATTGTCATTGTAAAGTGAAAACCAGATGGTATAAGCAACTATTAAACA
>XM_026927616.2
gagaggcacgtTGCTAAAGTTCGGTGCTGTGCCTCGAGATGCCCGCGATGTTGGAGAAGGGTACGACggagatttcagggaaaagaaaaggcagaaacTCGGTGAACAACCCgacaaaaagttttacttcCAACGGCAACAGTAACAGTTCTTGCCGAGCACGCCCTCTAATGCCCCCTCCATTGTGTACGGATGCCTCAGACATGACGCAGGGCTGTTGGAGTCACAGATTGCTTGGCTGCAGATGCAGAGAGCTGAGGCAGTGAAGCTGTATCTCTTCAACTGCATCTCAGGCTGAAAGTTGAAGTCAAAATGAAGAAGGTCTCTCAGAGTATTATGTTTTGGTGTTTGCTGGCTGCCTTTGTGCCTTGTGTTATAAGTGCAACACTTCCTCCCAATTCTGATGGAGAAAAGAAATTGAATACAGAGCTTCAGAAGAAGGATCTCTGTGTGCATAATAGGAGTTCAGAAGATTCAGTCGAGAACAGGGATACAGGGACACCTGTATCACAGAACAGTGATCAGCCAAGTGGAAGGATGAAACGGGGCTGTAACCTGCTCACCTGCTCAATACATGATCTAGCCTACCGCATCAACCAGCTCAGTAATAAGACAAATAACGCTCCCCAACGCAAGATCAGTCCCTGTGGCTACGGCCGGCGACGGAGGCGTTCCCTCCTCCGACGCTCCACCGCTCCAGCCCAAGGGGAGGGCCATCTGAATCTCTCCACACTTCAAGCCCAGAGACGTGACTCGCCTCAAAAACTGACTTAAGCCTCAATCTGCGGTTTGTCCTGAGCCTTTTTCTTATGTTGGCTCAGTTTGCTGAAATACTACTGACAACTCCTTTGCAGGCACAAAAATGGGGAACTACCATGTCCAAACAGCTGGAACCTCTTTCTCCATCCTTTACCAGAGAGACAGGACTAAAGATAAGGATTCGGGTCATCTGGAAAGAATGATTGTTTGTGTAAAGTGGGTCAGGCAGTTCTGTtttgtaagaaaaagaaaatcaggaGTTCAAGTGAGATAACAAGGGTGTGGGTTTATGGCAGCGATATGAAAGATACTTGAGCAGTTGTGTGTGCATTAGTTTGGGATAAGTCTCGATCTTACGGAACTCTGGGACCTGACAAGGCTCCCTGTCTCTCCCCAACGCAGGACATGCCACTTCTTCAAACCTCTGGAGAAGCAATGAGGTTATCCAGGAAACTACCAGCACCTCTGTTTTTTCTAGCAAGGGGAAAGAggacagagaaacacaaataCCAGCTAAAAGACTTTCACCAATAAGGCTCCATAAGGGAAATTAACTGAAAGAAGAGGTCTTTGTGAAAGCTGGATGTGAAAAGCTTGGACACTAATATCTGCTCACCTGCTTACATACTTGAAGCTGGATATGTGTATAGTGGGGGAATGTGCAATAATTGTAGCAGTATGTATTCCATCAGTAatggcataaaaaaaaagtaaaaaaaaaaaattatgaaaaataatgtatgttatggattcatatttttatacattcagTAATAATATACTTGTAATCTCAGAGATTAACTATTTTTATACAGGAACTAATATGGGTattgtatattaaaattaaataaccaTTACTTTTATACTGATTTAATGATAAACTTATGTTTATGTCAAGACATTGTCATTGTAAAGTGAAAACCAGATGGTATAAGCAACTATTAAACA

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116624 False 1300 TUCP 0.45 4 12312082 12314525
XM_026927614.2 False 1554 mRNA 0.41 4 12311822 12314519
XM_026927616.2 True 1707 mRNA 0.43 5 12311822 12345452

Neighbor

gene id symbol gene type direction distance location
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding downstream 8125 12282297 ~ 12303697 (-)
LOC113534448 NA coding downstream 42705 12267333 ~ 12269117 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding downstream 120461 12067030 ~ 12191361 (-)
rassf9 rassf9 coding downstream 264071 12035974 ~ 12047751 (-)
slc6a15 slc6a15,LOC107553966,LOC107740320,LOC107672330,LOC106573109 coding downstream 385565 11905608 ~ 11926257 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding upstream 18107 12363559 ~ 12385353 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding upstream 43421 12388873 ~ 12395662 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding upstream 113063 12458515 ~ 12463241 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding upstream 120694 12466146 ~ 12476898 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding upstream 136779 12482231 ~ 12489322 (-)
G98343 NA non-coding downstream 35593 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 36411 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 615157 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 618743 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 834708 11396116 ~ 11477114 (-)
G98383 NA non-coding upstream 132451 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 366642 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 382992 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 393497 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 418447 12763899 ~ 12774207 (-)
sspn sspn other downstream 433618 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 541836 11752525 ~ 11769986 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other downstream 700858 11586057 ~ 11610964 (-)
pdf pdf,spata2l other downstream 1132214 11172687 ~ 11179608 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 1729920 10527110 ~ 10581902 (-)
znf143b znf143,znf143b,LOC107672322 other upstream 51055 12396507 ~ 12405281 (-)
akip1 LOC108264820 other upstream 74985 12420437 ~ 12423978 (-)
G98770 NA other upstream 700371 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1205228 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1990484 14335936 ~ 14347008 (-)

Expression


Co-expression Network