akip1 (LOC108264820)


Basic Information

Item Value
gene id akip1
gene name LOC108264820
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12420437 ~ 12423978 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116638
ACATTTCCCAGCAACACTtgggagaggaagaaaaagttCACCCTTTACTTTCATTTACACGCCCAGCAGATCTGAACTAATGATTCTCCTGTAACAGCAATGTCGGGACAGCGGTGACTGTTCACAGGAACTAGAAACAACAGGAAAACATCTCGTGTTGCGCAGAGCGATCATGGCAGGTCGGTGTTGGCTGGAGTCTTCACTGGATCGTTCGTCTAAACTCGGACTTGAGGTGTTGCAGAGAGCCAAAAGAAGATCGGAAACCTGGAAGAGTGTAGGAACATCTCACCGAGATGATTCTGGCACTGAGAAACACACGGAGGTTCTGgaacaccctgctgcccataTGACCTTGGATAGTGCTTTTGCAAAAATAGTGGAATGCATGTCTGAAACCAGCAATCAATGCAAGAGGGTTTACAGGTCTGCAAGTGCAGCAGAGCTTCGTGATCAAGAGCGAACCCATGTGTGTCGCTTTCACGCTAAGCAGCATCTACAGACTTCAAGGCAAATTCAAACCACTACCTTAACCTCCAAAAGAGCTCATTACACTGTAAGCAATTCCCACATgtagtgaggggaaataagtattcagacacttttgtttttgttatttaatatacttccagttcatatatccacttcaaatgtacacacacaatgttttctgattttatactttcaaatattaacaaaaagatGTATATTGAAAAGCATAACCAACAATCTACGGTAATTCCAAACATGATGACCTGAATTATGGCcagttctatttttgttttatttttgactgttccaaaagagttctgatttgtctaaatgcttttagacacacacacacatctctgtaCTTCgtttttagcagaggagttttgtgTGGGATGTAGGAACAGAGATGATTGAGGTgaagttcattgcttattgttctctgtgtaactgtagttcctgctgctttcaggtcgacCTGCAACTCTTTTTCAGCAACTGCTGGCTTTTCTGTTACTTTCCTTATCATTAGTGTGAGAGTGCATTATGAAATCGTGCGTGGCACACATGTTTGGGGATGATTAGTTGTGGTTCTGTGAACGTTcgttccacctgcatattatcagACCAATTGTACGGACAGGgatgtccattttttttatatatgaatatatacttTGTTGTTCATATCTGTCATACAGAAtgaaaagacattatgtgtgtaaacttgaaaaggatatacagtatgcactgggag
>XM_026927498.2
GCAACACTtgggagaggaagaaaaagttCACCCTTTACTTTCATTTACACGCCCAGCAGATCTGAACTAATGATTCTCCTGTAACAGCAATGTCGGGACAGCGGTGACTGTTCACAGGAACTAGAAACAACAGGAAAACATCTCGTGTTGCGCAGAGCGATCATGGCAGGTCGGTGTTGGCTGGAGTCTTCACTGGATCGTTCGTCTAAACTCGGACTTGAGGTGTTGCAGAGAGCCAAAAGAAGATCGGAAACCTGGAAGAGTGTAGGAACATCTCACCGAGATGATTCTGGCACTGAGAAACACACGGAGGTTCTGgaacaccctgctgcccataTGACCTTGGATAGTGCTTTTGCAAAAATAGTGGAATGCATGTCTGAAACCAGCAATCAATGCAAGAGGGTTTACAGGTCTGCAAGTGCAGCAGAGCTTCGTGATCAAGAGCGAACCCATGTGTGTCGCTTTCACGCTAAGCAGCATCTACAGACTTCAAGGCAAATTCAAACCACTACCTTAACCTCCAAAAGAGCTCATTACACTGGTTTGTCTGAGCCAGAGGATTTCTTGATTGAAGTGTCTCCGGGCACTTACGCCATCACAGCAGCAATGCAGGATGCCGGCCCACAGACCCGAGTGGTGCACATCAATGCAGGGGAGAGCATGAGACTCACGTTCAACCTCTGACCTCAAGCTACTGTCCTCAGGGCTTGACAAAATGTTTCCAAATATgcacaaaaactgaaaatgaaattcttCATAACTGAATTTAAGCTCTTTGTTGCACTTAATGTAATGTGTACATGTACTACTCAGGGTATTTTCATTAGCAGTACTGAATTTTAACAGTTATGATCAAATAATGTGCAATACAAATTTTGCCTTATTTTGTGAACTTTTGGtgctgaaataaacacattattttttttttagatttcaacAGTATTTTGCTGCAAGTTATTGCAAGAGATACATTTTCTCTTTCAATTCACAGCAGCTTGATAGTCCATTACTAAATATTAGGGCTGCAACATatattcaataaattatttttgtata

Function

NR:

description
A-kinase-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116638 True 1243 TUCP 0.41 4 12421102 12423978
XM_026927498.2 False 1059 mRNA 0.42 5 12420437 12423968

Neighbor

gene id symbol gene type direction distance location
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding downstream 24775 12388873 ~ 12395662 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding downstream 35084 12363559 ~ 12385353 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding downstream 116740 12282297 ~ 12303697 (-)
LOC113534448 NA coding downstream 151320 12267333 ~ 12269117 (-)
mgat4c mgat4c,LOC107740326,LOC107553950 coding downstream 229076 12067030 ~ 12191361 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding upstream 34537 12458515 ~ 12463241 (-)
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding upstream 42168 12466146 ~ 12476898 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding upstream 58253 12482231 ~ 12489322 (-)
tango6 tango6 coding upstream 67417 12491395 ~ 12518992 (-)
il17c il17c coding upstream 95567 12519545 ~ 12522723 (-)
G98343 NA non-coding downstream 144208 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 145026 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 723772 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 727358 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 943323 11396116 ~ 11477114 (-)
G98383 NA non-coding upstream 53925 12477903 ~ 12478277 (-)
G98551 NA non-coding upstream 288116 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 304466 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 314971 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 339921 12763899 ~ 12774207 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 15156 12396507 ~ 12405281 (-)
admb NA other downstream 74985 12311822 ~ 12345452 (-)
sspn sspn other downstream 542233 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 650451 11752525 ~ 11769986 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other downstream 809473 11586057 ~ 11610964 (-)
G98770 NA other upstream 621845 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1126702 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1911958 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2923188 15347166 ~ 15357563 (-)
G101178 NA other upstream 5763469 18187447 ~ 18196806 (-)

Expression


Co-expression Network