G98383


Basic Information

Item Value
gene id G98383
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12477903 ~ 12478277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116665
TCAGTAACTTAAGCGTTAAAAACCTGTCTCAGACCTACCTTGAGATGACTATCTGAACCATGTTAGAACTGGTTTCTGAAAACACGACAAGAACCAAACGGACTGCagttcagtgtcagtgtgtgagagtcATTCAGCCCAAACTGCTGCCTGTGATAAACACATGAGTCCAAACAGTGACTGAGGCTGTCTCTCTCGGTGGTGCCCTTGGGTTTAACAAGGAGAAGAAAAGCTCGACAACCACTCCGCAAAGCTAAAATACATCAGCCAGCGTGAACGTCGTCAGTATAAGCTACTCTTCTCCCTCAGGTTTCTTCTCCCTCAGGTTTCCCGCCACTTCGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116665 True 343 lncRNA 0.47 2 12477903 12478277

Neighbor

gene id symbol gene type direction distance location
tbc1d15 tbc1d15,LOC107672302,LOC107686258,LOC107749074 coding downstream 1005 12466146 ~ 12476898 (-)
tph2 LOC108263971,LOC108423504,LOC107749937,LOC107686260 coding downstream 14662 12458515 ~ 12463241 (-)
wee1 wee1,LOC108264466,LOC107686254,LOC107740329 coding downstream 82241 12388873 ~ 12395662 (-)
swap70b swap70b,LOC108264467,LOC108423449,LOC107686252,LOC107740330,LOC107756911,LOC107672307 coding downstream 92550 12363559 ~ 12385353 (-)
ampd3b LOC108264598,LOC107686249,LOC107740331,LOC107583806,LOC107672288,LOC107569657 coding downstream 174206 12282297 ~ 12303697 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding upstream 3954 12482231 ~ 12489322 (-)
tango6 tango6 coding upstream 13118 12491395 ~ 12518992 (-)
il17c il17c coding upstream 41268 12519545 ~ 12522723 (-)
zc3h18 zc3h18,LOC106573693 coding upstream 45982 12524259 ~ 12552261 (-)
zfpm1 zfpm1 coding upstream 129596 12607873 ~ 12680438 (-)
G98343 NA non-coding downstream 201674 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 202492 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 781238 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 784824 11690997 ~ 11693079 (-)
G97831 NA non-coding downstream 1000789 11396116 ~ 11477114 (-)
G98551 NA non-coding upstream 233817 12712094 ~ 12713957 (-)
G98555 NA non-coding upstream 250167 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 260672 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 285622 12763899 ~ 12774207 (-)
G98588 NA non-coding upstream 324521 12802798 ~ 12803608 (-)
akip1 LOC108264820 other downstream 53925 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 72622 12396507 ~ 12405281 (-)
admb NA other downstream 132451 12311822 ~ 12345452 (-)
sspn sspn other downstream 599699 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 707917 11752525 ~ 11769986 (-)
G98770 NA other upstream 567546 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 1072403 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1857659 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2868889 15347166 ~ 15357563 (-)
G101178 NA other upstream 5709170 18187447 ~ 18196806 (-)

Expression


Co-expression Network