G98551


Basic Information

Item Value
gene id G98551
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12712094 ~ 12713957 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116849
GTTAGACAtcttttattataaacacataataaacacataataGACATGGTATAACAGGTACATTCCAGCAGGGAATATGAGGGCTGTAAAGCAAAGCACTCACAGTACATTAAGGACATGTACACGATTTGCTAAGCACATATTTTTCCAACAAAATGGATGTGCTACATCCCTTAAATATCCGGGTGCACCATGTGACAACATATACATATCCTATAAATTAACATCTTACAATCCAGTGATCCCTTTTTTGAACCAGCCATTGTGTTTCAATGCAAACTGCAATATTCTGTGATAAAAGCTCTGTATTTACAAACTATATATACACGCCTTACCTTATCCTCATGCAAAGAGACTTCAGTAGTTGCATAAATCTTTCTAAAACACCAGGCTTGTTTAACATTCTCCTCCACTGCTCAGCAGCTAATATGGAGTAACACGACCACCCTCTATTGACTGGACATGAAACTACACTACAGCAATGCTCAATTCACCATgaatacacatgcacactgaaCACAGGacagcacagcacaacacaacaccacaacAGCCGTTACACAGCACTACAGCTTGCGTTGATCTATCACTAAACAATTAGAACAACTCtacaaacacagcaaacacagacTTGGAGTGCACATAGAttacaaacaaatgcaaaactGCCTAAAACATCTTATACAACCACACACTAAATGTGGTGGGGGGACTAAAATATGTAAAACTGGAGGTTTACATTTCCAACATTTAACAAGGACAAATCACAGGGGGAAAATCTGTTAAAGGCACTTTGGACAGACTGGAGTTTTAAAGTTCACTCTGGAGGCTCGCGCACCACATGGATAATACAGGGAGTACGTAATACTGTTTTGCACATGAAAGATATGGGGCTCACATTTCTAGAAAAAATTGCACTATAAACAGCATGGAAATGCTGAGTCTGGgacaacagattttttttaatggaaggtTGTTTAAGCATAATTCAAACTTgacatgtctcacacacacaccatcaaacccACTCACATATTATCATACACTCTCTTACACACTATCacgctgtctcacacacactatcaatCATACCTTctctcacacaccatcataacTCTCTAACACACATTATCATATTCTCACGTgcacaAGAGCATGATAGAGTGTGTCACATGCCAAGTTTGAATTACAGTCTAAATGCCCTGTCATACATTTCTTTATGCTGTTGCCATATGAAGAGTGAGAGTTGGAAAACAAAATTTGAAAGACTAATAGAATGGGGGGTGAAGGGTGACAGTTCACCAGTTCCCCCAGCTCAATAAAGATACTTTCAGCATTAGCTTAGTTGAATAGGTAACTgagtatattatatacagttattGGATGACACTGAACCACTGAGAGTATAGCTGATCTGTCAGGTACTGATATGCATCTTAAACTTAGCATTTGTGTGACGCTGCAGCATAGCAGATGTACACAGAGTTATAGTGAGCAGCACTGGAATAAGTGCAATGTCCTTACCAACTCATAGATATGTTAACTTCAGGTGCTGGACTTTTGaaaatttttcaaataaaagtgGGTTGTACCAGTGCTCGACAGGATAAATGAGCAAGGCTGGAGTGAGCTTCCACCTGGGGCTGAACGGTGTTATATATTAGGGAACCGAACAGTAGGACAGAACAGGAGGATAGTGGAGTCATCTGTAGCTGCCATTCACTCCACAGCCATCTGTTCAATATGATCACTCAGCAACTTGTATTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116849 True 1769 lncRNA 0.39 2 12712094 12713957

Neighbor

gene id symbol gene type direction distance location
zfpm1 zfpm1 coding downstream 31656 12607873 ~ 12680438 (-)
zc3h18 zc3h18,LOC106573693 coding downstream 159833 12524259 ~ 12552261 (-)
il17c il17c coding downstream 189371 12519545 ~ 12522723 (-)
tango6 tango6 coding downstream 193102 12491395 ~ 12518992 (-)
has3 has3,LOC107740342,LOC107672271,LOC107707223 coding downstream 222772 12482231 ~ 12489322 (-)
foxl1 foxl1,LOC102233982 coding upstream 7789 12721746 ~ 12724527 (-)
b3gnt9 b3gnt9 coding upstream 28396 12742353 ~ 12745627 (-)
bbs2 bbs2,LOC107686271 coding upstream 34057 12748014 ~ 12762639 (-)
psme3ip1 fam192a coding upstream 190076 12904033 ~ 12914246 (-)
si:ch211-212o1.2 tmem189,si:ch211-212o1.2,LOC108264382,LOC107672277,LOC107738740,LOC107740306,LOC107583780,LOC103466733,LOC100695703 coding upstream 234630 12948587 ~ 12984645 (-)
G98383 NA non-coding downstream 233817 12477903 ~ 12478277 (-)
G98343 NA non-coding downstream 435865 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 436683 12274275 ~ 12275411 (-)
G97932 NA non-coding downstream 1015429 11680729 ~ 11696665 (-)
G97931 NA non-coding downstream 1019015 11690997 ~ 11693079 (-)
G98555 NA non-coding upstream 14487 12728444 ~ 12729493 (-)
G98563 NA non-coding upstream 24992 12738949 ~ 12742224 (-)
G98552 NA non-coding upstream 49942 12763899 ~ 12774207 (-)
G98588 NA non-coding upstream 88841 12802798 ~ 12803608 (-)
G98607 NA non-coding upstream 124263 12838220 ~ 12838542 (-)
akip1 LOC108264820 other downstream 288116 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 306813 12396507 ~ 12405281 (-)
admb NA other downstream 366642 12311822 ~ 12345452 (-)
sspn sspn other downstream 833890 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 942108 11752525 ~ 11769986 (-)
G98770 NA other upstream 331866 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 836723 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1621979 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2633209 15347166 ~ 15357563 (-)
G101178 NA other upstream 5473490 18187447 ~ 18196806 (-)

Expression


Co-expression Network