G98552


Basic Information

Item Value
gene id G98552
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12763899 ~ 12774207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116850
TAAGAACAGACATATGGTTATAAAGAAGTCTGATACTGCAAATGATTCTGATTTAATTCAACTTTTATTATCCACAAAGTTTGTAAGAAAAAGGTTACATTTTATGCATATTATCATTTGACACCAAGGCTTCTAACTCTTCAGATGTgttttaataagaaaagaaagtCTTACACAAATACCAGAAAGttgaaatatcacaaatataatCTCCCCTCCCCCAATTTAAGTCAAAAGCAAATAGTTTGACAAAAACACCACTACCAAGGACAGGTACCCCTGATTCTGTTTATTGGAATTTACACATAAAGAAACCTCAGGGAAGGCTACATGCTACAGGcagtaaaaaaaagacaaattccCATGGTGGTAAGAGCGTTGGAGTCTTCACTGACAGCACTTGGAATCGCACTGATTATCCTTGCACACGCATCCAGAGGCACACTTACTGCAGCTAGAGGGGCAGCAAGAGCAGCAGCCTTTTTTTGCAGGATGTACACTTGCAGTTTGTGCACTTGCAGGATGCACCGCAGGTGCaggttccagctgaagaaaggcaaagagagagagaacgcagTACCGTTAGTGAGGGATTTATTTACCCACTCAAGACACAGCTAAAGGAGGAAAAACATTACAACCTCTGCTGCTACTTACTCTTGGAGCACTCGCAGGGATCCATTATCGTCTTCAAAAGAAGAAATGCTCGTTAAGAGTCTTGGAATTTGGCAGAAGTAGCTCTTCTCGTGGTTGGAGGTTGACTGTgttgtgtgaatgagctgtggTGAATTTATAACACGCTCATGTGGGCAAGACGAGCGCAAAAGCAGCGGCTCCTCCTccaaacacactgcacacggCGTCCCGCTCATTGACTGACACAATTACGCCATCTAGACTGGGTGCAAACCCTCAGACAATCACTACACACGCCTTCCCCACATCAACACCATGTTTATCTCAttccacacaaacactgctcttTCTAAAATCTTTCTTGGTTTCCCTCAAAAAGcgccatggtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagactgagactgagTTTGACTGAAAcacttttggttcatttgctttaaaaaacttAGTTTTTAGTGCAATTTGGAAGTCCAATATTTGGAAGAGGTCCGTGATTAATGATAAAAGGATTTGCTTAAGTCACTCGTTGCACACGGCACTTCCTAACGCACGAGACCAAGCACTTTTCccaattttgtttattaaacaaaaaaaaaacttttcacatTCAATCTCCAA
>TU116852
CAGAGCATTGCTTTTATGCCTGGTGTTGtgcagaaagtttaaaaaaaaatatataaagaaatttaTTTGCTCACTCATACTATAAGACAAGCAATAGTTCTTCTGTAGCTGTAAAATTAACACAACCCTGAGACTATGAAAAGGTAGGATGTACAATGAAGGATAAGAAATCACTGTGCAAGTGATTCTGATATAATTCAACCTTTATTATCCACAAAGTTTGTAAGAAAAggttacattttatatattatattatcatttgaCACCAAGGCTTCTAACTCTTCAAATGTGCTTTAATAACAAAAAGGTCTTACACAAATACCATACAGTTgacatgaggggaaaaaaaaaaaaaaatcccaacacCATTAAATTCAAAAGCAACAAGTTTGACAAAAACACCACTACCAAGGACAGGTACCCCTGATTCTGTTTATTGGAATTTACACATAAAGAAACCTCAGGGAAGGCTACATGCTACAGGcagtaaaaaaaagacaaattccCATGGTGGTAAGAGCGTTGGAGTCTTCACTGACAGCACTTGGAATCGCACTGATTATCCTTGCACACGCATCCAGAGGCACACTTACTGCAGCTAGAGGGGCAGCAAGAGCAGCAGCCTGGGGAGAAAAAGAGCTACTTGTGAGCATTTGGAGAGTCAGGCAATAAAGCAAGTTTTCCTTCATGGAGAAATGCAAGAAAAGCTTACTTTTTTTGCAGGATGTACACTTGCAGTTTGTGCACTTGCAGGATGCACCGCAGGTGCaggttccagctgaagaaaggcaaagagagagagaacgcagTACCGTTAGTGAGGGATTTATTTACCCACTCAAGACACAGCTAAAGGAGGAAAAACATTACAACCTCTGCTGCTACTTACTCTTGGAGCACTCGCAGGGATCCATTATCGTCTTCAAAAGAAGAAATGCTCGTTAAGAGTCTTGGAATTTGGCAGAAGTAGCTCTTCTCGTGGTTGGAGGTTGACTGTgttgtgtgaatgagctgtggTGAATTTATAACACGCTCATGTGGGCAAGACGAGCGCAAAAGCAGCGGCTCCTCCTccaaacacactgcacacggCGTCCCGCTCATTGACTGACACAATTACGCCATCTAGACTGGGTGCAAACCCTCAGACAATCACTACACACGCCTTCCCCACATCAACACCATGTTTATCTCAttccacacaaacactgctcttTCTAAAATCTTTCTTGGTTTCCCTCAAAAAGcgccatggtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagactgagactgagTTTGACTGAAAcacttttggttcatttgctttaaaaaacttAGTTTTTAGTGCAATTTGGAAGTCCAATATTTGGAAGAGGTCCGTGATTAATGATAAAAGGATTTGCTTAAGTCACTCGTTGCACACGGCACTTCCTAACGCACGAGACCAAGCACTTTTCccaattttgtttattaaacaaaaaaaaaacttttcacatTCAATCTCCAA
>TU116862
CAGAGCATTGCTTTTATGCCTGGTGTTGtgcagaaagtttaaaaaaaaatatataaagaaatttaTTTGCTCACTCATACTATAAGACAAGCAATAGTTCTTCTGTAGCTGTAAAATTAACACAACCCTGAGACTATGAAAAGGTAGGATGTACAATGAAGGATAAGAAATCACTGTGCAAGTGATTCTGATATAATTCAACCTTTATTATCCACAAAGTTTGTAAGAAAAggttacattttatatattatattatcatttgaCACCAAGGCTTCTAACTCTTCAAATGTGCTTTAATAACAAAAAGGTCTTACACAAATACCATACAGTTgacatgaggggaaaaaaaaaaaaaaatcccaacacCATTAAATTCAAAAGCAACAAGTTTGACAAAAACACCACTACCAAGGACAGGTACCCCTGATTCTGTTTATTGGAATTTACACATAAAGAAACCTCAGGGAAGGCTACATGCTACAGGcagtaaaaaaaagacaaattccCATGGTGGTAAGAGCGTTGGAGTCTTCACTGACAGCACTTGGAATCGCACTGATTATCCTTGCACACGCATCCAGAGGCACACTTACTGCAGCTAGAGGGGCAGCAAGAGCAGCAGCCTTTTTTTGCAGGATGTACACTTGCAGTTTGTGCACTTGCAGGATGCACCGCAGGTGCaggttccagctgaagaaaggcaaagagagagagaacgcaTCTTGGAGCACTCGCAGGGATCCATTATCGTCTTCAAAAGAAGAAATGCTCGTTAAGAGTCTTGGAATTTGGCAGAAGTAGCTCTTCTCGTGGCTGGAGGTTGACTGTGTTGTGGGAATGAGCTGTGGTGAATTTATAACACGCTCATGTGGGCAAGACGAGCGCAAAAGCAG

Function

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116850 False 1295 lncRNA 0.42 2 12763899 12765281
TU116852 True 1527 lncRNA 0.41 2 12763899 12774207
TU116862 False 893 lncRNA 0.40 3 12773138 12774207

Neighbor

gene id symbol gene type direction distance location
bbs2 bbs2,LOC107686271 coding downstream 1260 12748014 ~ 12762639 (-)
b3gnt9 b3gnt9 coding downstream 18272 12742353 ~ 12745627 (-)
foxl1 foxl1,LOC102233982 coding downstream 39372 12721746 ~ 12724527 (-)
zfpm1 zfpm1 coding downstream 83461 12607873 ~ 12680438 (-)
zc3h18 zc3h18,LOC106573693 coding downstream 211638 12524259 ~ 12552261 (-)
psme3ip1 fam192a coding upstream 129826 12904033 ~ 12914246 (-)
si:ch211-212o1.2 tmem189,si:ch211-212o1.2,LOC108264382,LOC107672277,LOC107738740,LOC107740306,LOC107583780,LOC103466733,LOC100695703 coding upstream 174380 12948587 ~ 12984645 (-)
znf423 znf423,si:ch211-216l23.1,LOC107738741,LOC107583782 coding upstream 214138 12988345 ~ 13137217 (-)
lonp2 lonp2,LOC107686284 coding upstream 600652 13374859 ~ 13395693 (-)
il34 NA coding upstream 624068 13398275 ~ 13404730 (-)
G98563 NA non-coding downstream 21675 12738949 ~ 12742224 (-)
G98555 NA non-coding downstream 34406 12728444 ~ 12729493 (-)
G98551 NA non-coding downstream 49942 12712094 ~ 12713957 (-)
G98383 NA non-coding downstream 285622 12477903 ~ 12478277 (-)
G98343 NA non-coding downstream 487670 12275722 ~ 12276229 (-)
G98588 NA non-coding upstream 28591 12802798 ~ 12803608 (-)
G98607 NA non-coding upstream 64013 12838220 ~ 12838542 (-)
G98767 NA non-coding upstream 253251 13027458 ~ 13028597 (-)
G98776 NA non-coding upstream 354993 13129200 ~ 13135173 (-)
G98790 NA non-coding upstream 408136 13182343 ~ 13182550 (-)
akip1 LOC108264820 other downstream 339921 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 358618 12396507 ~ 12405281 (-)
admb NA other downstream 418447 12311822 ~ 12345452 (-)
sspn sspn other downstream 885695 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 993913 11752525 ~ 11769986 (-)
G98770 NA other upstream 271616 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 776473 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1561729 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2572959 15347166 ~ 15357563 (-)
G101178 NA other upstream 5413240 18187447 ~ 18196806 (-)

Expression


Co-expression Network