G98563


Basic Information

Item Value
gene id G98563
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12738949 ~ 12742224 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU116875
TTTATTACATCCAGTCTTCAAATATTATTCttgctgaacacactgtaacaaTGTTTAATGAACAAAATTTAATGCTTTCAGTAGACTAGACGAGAGAAAAACTAGTCACAGCATTTTTGCATGGGTTCAAAGGCCTGGTCAAGCTTATAGCTGGCCCTTTCAATGAATTCTTCACCACAGCTAGAattattgctttaaaaacaaatgaacaagaaaaacaacaacagaatatATGCCTGATAAATACCAAATTTCTAAGTGTTACTTGCGAAATACAAAACACCACATGGCAATGAATCATGATTCACAATGTTTAATTAGGAATCCCATTTCCAGAAATGGGCCAAATATACTGAATCCACAAAAAATAATCACTTTGGAGGATGGGGGTGAAAACGTACAACATGTCAGGAATACAATACATAGCATTTATATGTGCATTACACTGAACAGAAGTTTCTTCTCTGAATCATTCCAATGCAACATTAGCATAAagtcaaaaacaggaaataagcaAGAATGTTGATGAAAATGAAGCATTCACTTGCTCCCGGCATTAAAAAAGATCCACCTGAGATTGGGCAGGCAATCAGCCCATCAAACTACTCTCTCCTAACATCTTCTAAACGGTACAACTGAGTGGTTGTGTTGCTTCTTTTCAGAATTTCCTGGATGAACTTCTGAACTTGAGACTCCAGTTGTGCATGTAAAAAAATACCCTTGTATGAATGTAAAAGCTATTCATAAGAACTTCAAATAGATTCTATGAAAGTGCGCGTTTTGTTCTGTAGAAACATCACAACCATCAGAGTGAATGTTGAAGAGCTGAACGAGCTGCTGGGAATAATCTGGTGCAACGAATGTAAAAACGTGTCATTATGGGTAAACAAAATTTCCATGGTTGTACCAAAGtactttttaactttaatttgtGACTTGATTTCGTCAGCCCTTTATGACAATTTTACTTTCATACATActcattaaagtttttttttgcaagacgGCTGTAACAGACAGTCCACCGGATTTAGAGTTTAGCTGTACATGCTCAATCATACACAAAGcagtttaaataaatttcattaaCACTCAAGTCAAGCTTGGCGAGAGATGACAGCGTTAATAGCAGTTCcgacttttactttttttttttctttaatttaatgtgGAACTTGCTGTAAGCAAGGGTTAAAACTGAGAACATGAACCACAACCTTCCTTCACAACTTGTGTAAATGCACAGGAGACCAATCAATGCCCACATACGCCTGCATCACATACTGCAGAAGCCTGAGCTGCAAAGATTTGTTCAGTGGAGGCTGACAGTCCTGCTACAGAAGAAAACATCATCACACATTTCTATCTAGAAGCATTTGACACTGTGGGGCtcagctttaattttaaaacaacagtCCTAGAGAATGAGACTACAGCACAGTTTCTGACTTCCCTCATTAAACACATGCCTTCTCTAAACCTTGTAATGAAACAATGaggtgaatcaggtgtgttttatttagcaAGGGAACCAACAAGAAGTGCTAAACGACTGGACTTATTTAGACGAACATAAAATACTAGAAAATCCTCCTGCAGTCCTGCAAGCACTGCAGTCATCTCACATCATCTCCCAAAGGTGGTCAACCATGGGCTGCTGCTACAGTGTCCATCTGAACCACCACGGTTTGAAAACTCAGAACTCTTTCAGTTTGAAAGGACAATATGAAGCATATTTGACAAGAGATTTCCAGAGTTCAAACTGATCTGAACCCACATGGTACCATGAGCTTAAAAGGACAAGACTTTAAGAATACACTATTTACAGATCTGTACATAAACGGACACAGCAGCAGAGTGCCGTGGAAAACCTCATGTCTGTCTGGTACAGAAACACCAGCAGACCTCTCTGTAGACCAGAAACCAAAACATAGAGCAACATAGGATATCTAGtactaaaatacttttaaataagagtacaagagtaaataattataataaggATTTCTGGGAAGTaaccaaaacaaaaagtttttaaCTTTCTGGTAAATTAAGATGATCCGTCTATGATTCTTCCTTCTTTGGCTAATATTTTGGCAATTTTGAGATAGTTGAAAAAGATTTATGAGACCAAATCCACAAACAGGGTGAAAGGGAGTGTAGAGAAAGTGGGGGGAAAAGTGTGTGAGATCCAGAAAGTCCAGAGGGCTGCATTACGAGCttgaaaatcagtgtttcctCTGCCTTAATCTACTCTCACATAATCTCTGCCTCCCACACTCAATAATCCCAACAGTCCTCAGTGGAAAGAAGTCAATAAGTCAGTTGTCAAGTAAATATGATAGTTTGATAAATATGTTTAGTGCAAATGTTAAAAATCAATGCTTTACCTTAAAACAACACTCAGAGATGATAGACAACGAACCTAATGCTAAGCTGAAGATTGCACTGCACAGCTTTGCAAAGGGAGAAGACCCGTGCTGTGTACTTAACCTGCGTACATGTGTTTGAAAGGGAGAAACTcatgtgccaagaaaacattcacagcactgacacaccaTCACTGCGCAACTAATTTGTGCTTGTAATAACGTACATCATACAGTcctaacttaaaaaaaaaacaatccataAAGCAACACTTTATTCATGCAGTGGATGCCAGTGTGCCATGTATTTATCTGTACTGGCTGTGTGTGCCATTACTGCTGTACTGAAATGAACCGAATGTGTGTCTAAAGAGTGTGTAATGTGCAGTAAAGCAACCAGTGATGAAATGCATGTCACATCCACCCTGTGGTGTCTGTGCCTTATGTAGGACaaatttaATGTATGCACAATGCTTATTAATGTAAgagataaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaatgcttCACTGTGCTATGCTGACACAgacagaggaggaagagagaggaagaagcaATGCagtcagttgtgtgtgtttctataaaGGGGGTCAGGGAAGGACACCGATCCTGGTGTGCAGCTGAAGGATGAAGGAGGATGGCTGGGGAACTCCCAGCACGTGGCTCTCTAGCTTGTGTGATGGCAGCAGTGAGGGAAGGCACACTGCGCTGGTGGGCCCTACAGGGCAGGACGGGAATCTCAGTGAGCACTCGTCTCGGCACGTGGAAGGCTGGCAGGGCGAGGGGCTCCATACAGGGTCACTGATGCTATGTGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116875 True 3213 lncRNA 0.40 3 12738949 12742224

Neighbor

gene id symbol gene type direction distance location
foxl1 foxl1,LOC102233982 coding downstream 14422 12721746 ~ 12724527 (-)
zfpm1 zfpm1 coding downstream 58511 12607873 ~ 12680438 (-)
zc3h18 zc3h18,LOC106573693 coding downstream 186688 12524259 ~ 12552261 (-)
il17c il17c coding downstream 216226 12519545 ~ 12522723 (-)
tango6 tango6 coding downstream 219957 12491395 ~ 12518992 (-)
b3gnt9 b3gnt9 coding upstream 129 12742353 ~ 12745627 (-)
bbs2 bbs2,LOC107686271 coding upstream 5790 12748014 ~ 12762639 (-)
psme3ip1 fam192a coding upstream 161809 12904033 ~ 12914246 (-)
si:ch211-212o1.2 tmem189,si:ch211-212o1.2,LOC108264382,LOC107672277,LOC107738740,LOC107740306,LOC107583780,LOC103466733,LOC100695703 coding upstream 206363 12948587 ~ 12984645 (-)
znf423 znf423,si:ch211-216l23.1,LOC107738741,LOC107583782 coding upstream 246121 12988345 ~ 13137217 (-)
G98555 NA non-coding downstream 9456 12728444 ~ 12729493 (-)
G98551 NA non-coding downstream 24992 12712094 ~ 12713957 (-)
G98383 NA non-coding downstream 260672 12477903 ~ 12478277 (-)
G98343 NA non-coding downstream 462720 12275722 ~ 12276229 (-)
G98342 NA non-coding downstream 463538 12274275 ~ 12275411 (-)
G98552 NA non-coding upstream 21675 12763899 ~ 12774207 (-)
G98588 NA non-coding upstream 60574 12802798 ~ 12803608 (-)
G98607 NA non-coding upstream 95996 12838220 ~ 12838542 (-)
G98767 NA non-coding upstream 285234 13027458 ~ 13028597 (-)
G98776 NA non-coding upstream 386976 13129200 ~ 13135173 (-)
akip1 LOC108264820 other downstream 314971 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 333668 12396507 ~ 12405281 (-)
admb NA other downstream 393497 12311822 ~ 12345452 (-)
sspn sspn other downstream 860745 11870908 ~ 11878204 (-)
plekhg7 plekhg7,LOC107583891 other downstream 968963 11752525 ~ 11769986 (-)
G98770 NA other upstream 303599 13045823 ~ 13052311 (-)
c6h15orf39 c4h15orf39 other upstream 808456 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1593712 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2604942 15347166 ~ 15357563 (-)
G101178 NA other upstream 5445223 18187447 ~ 18196806 (-)

Expression


Co-expression Network