G98790


Basic Information

Item Value
gene id G98790
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13182343 ~ 13182550 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117133
GTGACCTTAAGGTTACCCCACTTAATAACTTGCTCTAATATGATAGGCCTGTTgacaaatgtaaatgatttatctAACTGAGTTTAAAAACCCATCGCACTGACAAACCAATAACCAAATTTGTGTTATACCAGCTCAACATACATCAAGATTTTCTTTGGTTCACTCAACAAAGGGTCCAATTGCAGTCTTTGCCCTTAGAAGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117133 True 208 lncRNA 0.37 1 13182343 13182550

Neighbor

gene id symbol gene type direction distance location
znf423 znf423,si:ch211-216l23.1,LOC107738741,LOC107583782 coding downstream 45126 12988345 ~ 13137217 (-)
si:ch211-212o1.2 tmem189,si:ch211-212o1.2,LOC108264382,LOC107672277,LOC107738740,LOC107740306,LOC107583780,LOC103466733,LOC100695703 coding downstream 197698 12948587 ~ 12984645 (-)
psme3ip1 fam192a coding downstream 268097 12904033 ~ 12914246 (-)
bbs2 bbs2,LOC107686271 coding downstream 419704 12748014 ~ 12762639 (-)
b3gnt9 b3gnt9 coding downstream 436716 12742353 ~ 12745627 (-)
lonp2 lonp2,LOC107686284 coding upstream 192309 13374859 ~ 13395693 (-)
il34 NA coding upstream 215725 13398275 ~ 13404730 (-)
sf3b3 sf3b3 coding upstream 228810 13411360 ~ 13440802 (-)
LOC113534846 NA coding upstream 254351 13436901 ~ 13436975 (-)
aars1 aars,LOC107686288,LOC107738729 coding upstream 292981 13475531 ~ 13491284 (-)
G98776 NA non-coding downstream 47170 13129200 ~ 13135173 (-)
G98767 NA non-coding downstream 153746 13027458 ~ 13028597 (-)
G98607 NA non-coding downstream 343801 12838220 ~ 12838542 (-)
G98588 NA non-coding downstream 378735 12802798 ~ 12803608 (-)
G98552 NA non-coding downstream 408136 12763899 ~ 12774207 (-)
LOC117597528 NA non-coding upstream 128845 13311395 ~ 13318008 (-)
G99118 LOC108280567 non-coding upstream 463025 13645575 ~ 13647786 (-)
G99134 NA non-coding upstream 550401 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding upstream 582376 13764926 ~ 13765056 (-)
LOC113534347 NA non-coding upstream 600225 13782775 ~ 13784737 (-)
G98770 NA other downstream 130032 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 758365 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 777062 12396507 ~ 12405281 (-)
admb NA other downstream 836891 12311822 ~ 12345452 (-)
sspn sspn other downstream 1304139 11870908 ~ 11878204 (-)
c6h15orf39 c4h15orf39 other upstream 368130 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1153386 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 2164616 15347166 ~ 15357563 (-)
G101178 NA other upstream 5004897 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6797519 19980069 ~ 19980259 (-)

Expression


Co-expression Network