G98944



Basic Information


Item Value
gene id G98944
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13690508 ~ 13690919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU117307
GACAAGACAGTAAATAATTCTTAACCTTAATGTGAAAAGCAACATAATGGAACTTATGGCTTGGCCACAATAAAAGGGTCATGTTCAAGTGTCATTTAGAGGACAAAGGAGTTTAGATAAAGTGAAATTTTGCACACTTACAAAAGCCATGAATAGCAGAAATAAGGTCACCATTTATCACTGTACTGATGGAGTGgtaatttcatgttttaaacCCTCTTGTGTACCTGCGGCCAGTGTAACCTGCCATACATTGGCATTGTCCAGTGATGTGGTCACACAGTCCCCCATTACGGCACGAGCAGTCCTTACTGCAGTTGATGCCAAATTTGCCTAATGGGCAGGGCTGGGCACACACAGACCCCTGTGgtgtaataaagaaagaatgtgtgtgagtgttggaGAATAAAAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU117307 True 412 lncRNA 0.42 1 13690508 13690919
Loading

Neighbor


gene id symbol gene type direction distance location
rab11a rab11a,LOC105007892,LOC100698633,LOC106591986,LOC103378951,LOC106588008,LOC106562755 coding upstream 38803 13645900 ~ 13651705 (+)
slc24a1 slc24a1 coding upstream 77715 13589003 ~ 13612793 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107583769,LOC107672296,LOC107596982 coding upstream 107581 13576021 ~ 13582927 (+)
arih1 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 coding upstream 141620 13530236 ~ 13548888 (+)
pllp NA coding upstream 168077 13517575 ~ 13522431 (+)
map2k1 map2k1,LOC107583767,LOC107672217,LOC107596971,LOC107686295 coding downstream 77192 13768111 ~ 13780277 (+)
zwilch zwilch coding downstream 98904 13789823 ~ 13801596 (+)
smad6b smad6 coding downstream 181256 13872175 ~ 13896500 (+)
iqch iqch coding downstream 270910 13961829 ~ 14027467 (+)
c6h15orf61 c4h15orf61,zgc:162898,cunh15orf61,LOC103025902,LOC107738714,LOC107686305,LOC107583911,LOC107718314 coding downstream 295905 13986824 ~ 13988185 (+)
G98943 megf11,LOC107583869,LOC107672222 non-coding upstream 873 13689389 ~ 13689635 (+)
G98930 NA non-coding upstream 22507 13667788 ~ 13668001 (+)
G98928 megf11 non-coding upstream 23153 13667127 ~ 13667355 (+)
G98924 NA non-coding upstream 31196 13658902 ~ 13659312 (+)
G98923 megf11 non-coding upstream 32846 13657170 ~ 13657662 (+)
G98945 NA non-coding downstream 427 13691346 ~ 13691568 (+)
G98960 NA non-coding downstream 49904 13740823 ~ 13784775 (+)
LOC113534369 NA non-coding downstream 66934 13757853 ~ 13758489 (+)
LOC113534555 NA non-coding downstream 146798 13837717 ~ 13846145 (+)
G98996 NA non-coding downstream 200505 13891424 ~ 13924313 (+)
nlrc5 nlrc5 other upstream 831974 12837299 ~ 12858534 (+)
uri1 uri1 other upstream 2500399 11151714 ~ 11190109 (+)
vps9d1 vps9d1 other upstream 2523706 11145154 ~ 11166802 (+)
hsbp1b NA other upstream 3105003 10581994 ~ 10585505 (+)
LOC113534705 NA other upstream 4342073 9342734 ~ 9348435 (+)
G98946 megf11 other downstream 688 13691607 ~ 13715766 (+)
G98972 NA other downstream 94176 13785095 ~ 13789390 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other downstream 241620 13932539 ~ 13956351 (+)
skor1b skor1 other downstream 344309 14035228 ~ 14042452 (+)
G99341 synm other downstream 829882 14520801 ~ 14524480 (+)

Expression


G98944 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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G98944 Expression in each Bioproject

Bar chart with 2 bars.
G98944 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G158876 NA non-coding NC_035914.1 CM008317.1 16995117 ~ 16995418 (+)