G98946 (megf11)


Basic Information

Item Value
gene id G98946
gene name megf11
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13691607 ~ 13715766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117309
TGAAAATCCAACAGTAATTAcatttaactaaaataaaagaatcttaACTGCACAATGCATCAGAAAGTGCTAGCACTGGTAATGGTGTTATGCAACACTACAGGAGACCATATCTATGCATTTGGTATGTGTGATAAGCTACTTACACAGCACCCATATACCCAGGGGCACAGATGCATTCACCTGTCTCGTGGTGACAGGTGGCTCCGTTAAGACATTGGCACTGCAGCTGGCAACCCTTGCCATAGTAGCCAGGCTCACAGGGGTCCTCACATCGCCAGCCCTGGTAGCCGTCCGTGCAGACACAAGCCCCAGTGATGGGGTTACACAGGGCTCCGTTCTGACACTGACAACGGTTACTGCAATGAGGTCCCCAGTAGCCACTCTCACAGCCTCCTGTGCTGTTTTCTCTGTAATAGATTGAG

Function

symbol description
megf11 Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MEGF11 (multiple EGF like domains 11).

NR:

description
PREDICTED: multiple epidermal growth factor-like domains protein 11 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117309 True 425 TUCP 0.49 2 13691607 13715766

Neighbor

gene id symbol gene type direction distance location
rab11a rab11a,LOC105007892,LOC100698633,LOC106591986,LOC103378951,LOC106588008,LOC106562755 coding upstream 39902 13645900 ~ 13651705 (+)
slc24a1 slc24a1 coding upstream 78814 13589003 ~ 13612793 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107583769,LOC107672296,LOC107596982 coding upstream 108680 13576021 ~ 13582927 (+)
arih1 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 coding upstream 142719 13530236 ~ 13548888 (+)
pllp NA coding upstream 169176 13517575 ~ 13522431 (+)
map2k1 map2k1,LOC107583767,LOC107672217,LOC107596971,LOC107686295 coding downstream 52345 13768111 ~ 13780277 (+)
zwilch zwilch coding downstream 74057 13789823 ~ 13801596 (+)
smad6b smad6 coding downstream 156409 13872175 ~ 13896500 (+)
iqch iqch coding downstream 246063 13961829 ~ 14027467 (+)
c6h15orf61 c4h15orf61,zgc:162898,cunh15orf61,LOC103025902,LOC107738714,LOC107686305,LOC107583911,LOC107718314 coding downstream 271058 13986824 ~ 13988185 (+)
G98945 NA non-coding upstream 39 13691346 ~ 13691568 (+)
G98944 NA non-coding upstream 688 13690508 ~ 13690919 (+)
G98943 megf11,LOC107583869,LOC107672222 non-coding upstream 1972 13689389 ~ 13689635 (+)
G98930 NA non-coding upstream 23606 13667788 ~ 13668001 (+)
G98928 megf11 non-coding upstream 24252 13667127 ~ 13667355 (+)
G98960 NA non-coding downstream 25057 13740823 ~ 13784775 (+)
LOC113534369 NA non-coding downstream 42087 13757853 ~ 13758489 (+)
LOC113534555 NA non-coding downstream 121951 13837717 ~ 13846145 (+)
G98996 NA non-coding downstream 175658 13891424 ~ 13924313 (+)
G99006 NA non-coding downstream 274176 13989942 ~ 13990153 (+)
nlrc5 nlrc5 other upstream 833073 12837299 ~ 12858534 (+)
uri1 uri1 other upstream 2501498 11151714 ~ 11190109 (+)
vps9d1 vps9d1 other upstream 2524805 11145154 ~ 11166802 (+)
hsbp1b NA other upstream 3106102 10581994 ~ 10585505 (+)
LOC113534705 NA other upstream 4343172 9342734 ~ 9348435 (+)
G98972 NA other downstream 69329 13785095 ~ 13789390 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other downstream 216773 13932539 ~ 13956351 (+)
skor1b skor1 other downstream 319462 14035228 ~ 14042452 (+)
G99341 synm other downstream 805035 14520801 ~ 14524480 (+)
carmil2 carmil2,rltpr other downstream 1584716 15300482 ~ 15346146 (+)

Expression


Co-expression Network