G98996


Basic Information

Item Value
gene id G98996
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13891424 ~ 13924313 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117364
GTCTAACCCTACCTTTTGTCTACTTCTTTTTTAGCTTCTTTTCATATTGTCCCACTGCATGCAAAGTCTTGGGTGCATCAGTACAATTCAGGATTATTGTCATAAACAATATAACTAGCATGCCactaatgtcattattttttttttacattccacATCTATTCAGAACTGAATTGAGAACATGTATCTGCAGTATGTAGACCCTATATTCCCACCTTGAGTAACAGCTCAAGTATTGTAACGCCTTTGGGCTGACCTAGAGCACGTACAGTATGATTCATGTACAGTTTGCCAGGTTATTGAACTGTGCCATCTGAGGAAGTGGCATGACCCGGCTTTGATACTCCTCACtcctgaatgagtgtgtaaaagaGGAGAAGCAGCTGTATAGGTCTGGAGTGGTTTCCATGGAGCACTTTGCTTGTTGGGGGAACAACCTCGCTCTTTGCCCTGCAAAGCACAGGATGAGAAAAGAGCCATGAAATGCATTTGTTTACCCAAGTGATTGCACTGGTAGTTTTAACAGGGCATTATGTGCAAGTGTAGACATTCAAAGGGAACGCCTTTGTGCATTTGTGCATTTGTGCGTGCACGTATGTTTGTGTGCGCTTTACTTTTTGAAGTAGTTTgaacaatgaaacaaaacaaaaggctggacagaaagaaaaggcTGCTTTCCAGATAGCCGTGCACTTGCTTTGAAAGTAACTAGCGTCATTTGAGGTagtctttttctccattttgacTTCTAAGTCTAAAAATCACTCATGTTGTTGACTGACCTGTATTATTTACACTCCACTGTTAACACCCTTGATCCACTGTTTGAGTGTGCAGTTTACCATTAAATCATCCTAAAAGCCCTTGGCTTTAATGTAATTCAGTTTTACAGAGCAGCGTTGCAGAGCACTTCAACAAAGGCGTAGCACTTTTTTCACAAATGATTACCAGCCTGCATTTATACGCAGTATAAAGAGTGTGATTTGTTTCAAGTTCTTTTTCCTGAAGGTCATCTTTTCTTGGTGAAATGATTTCCATAAGTGAATTCCAAATTTAGGCTGTCTGAGGgtgctgtgtctgtgttggCTGCTGACAGCGTGTGTCTTTTAGGAGACTGATGCTGAGAGGAGACAGTTCTGAGAATATAATGGTGATAATAATGGCCGCTACTTTCCTAATGGGTAAACGGAGCTGTTCCGAGGTGGCGAGGTTAAACAGATGCAAAGTGGCGTAATTGCTTCCAGCTTTctcccctctgtgtgtgtttgtgtgtgtggagcagatGAGTGTCTGTATCAGGCATTTGCTCTACGAAAATAACATGATTGCATATTTTatatgcaaagaaatggaatCTCGATTGTTTTTAATTACCACTAGCAGTGTCTTCCACTTGTATCCAAGTTTCTGAGGAGAATCTGAAATGGGACATGCCTTGATATAGATACCATTCATCAGATTTTTTGGGAGTTTGTGTCAGTTCTGGCACCTGTATGACAACTGATGCTCTAGTGCACTTGGCACCACTAACGGAGAACTGCTTGTCTTACTGCTGGAGATCGCTGGGGAGAGACAGGACAGGAATTCTGCATCTTCTTTGTTATTTGCCAGCAAGATGAGGTACATTTAACTGCCCTACCTGACCTCTAAACTGAAAGTGAATGCGTCTTCTTTAAGACACTGCTTTAAGTGGGGTGACAAAATGGTGGCAAATtgataaatacagaaaaagacagggagagaaaattTAACTAAGTGAAACAGAGACCACAGAGGCTCTACTGATTATTTCCAAacaggactgtgtgtgttggatgaggaagaatgtaaatgagaaagagagagatggtacTGTTTTATTAAGGAGATTCTAATAACTTTTCCCTTCCCAGgaagatttcttctctctctctctctctctctctctccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117364 True 1930 lncRNA 0.41 2 13891424 13924313

Neighbor

gene id symbol gene type direction distance location
zwilch zwilch coding upstream 89828 13789823 ~ 13801596 (+)
map2k1 map2k1,LOC107583767,LOC107672217,LOC107596971,LOC107686295 coding upstream 111147 13768111 ~ 13780277 (+)
rab11a rab11a,LOC105007892,LOC100698633,LOC106591986,LOC103378951,LOC106588008,LOC106562755 coding upstream 239719 13645900 ~ 13651705 (+)
slc24a1 slc24a1 coding upstream 278631 13589003 ~ 13612793 (+)
hacd3 hacd3,LOC107738726,LOC107686290,LOC107583769,LOC107672296,LOC107596982 coding upstream 308497 13576021 ~ 13582927 (+)
iqch iqch coding downstream 37516 13961829 ~ 14027467 (+)
c6h15orf61 c4h15orf61,zgc:162898,cunh15orf61,LOC103025902,LOC107738714,LOC107686305,LOC107583911,LOC107718314 coding downstream 62511 13986824 ~ 13988185 (+)
pias1b pias1b,pias1,LOC108264782,LOC108424062,LOC107596961 coding downstream 121570 14045883 ~ 14073956 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding downstream 154428 14078741 ~ 14088899 (+)
uacaa LOC108264780 coding downstream 167437 14091750 ~ 14106349 (+)
LOC113534555 NA non-coding upstream 45279 13837717 ~ 13846145 (+)
G98960 NA non-coding upstream 106649 13740823 ~ 13784775 (+)
LOC113534369 NA non-coding upstream 132935 13757853 ~ 13758489 (+)
G98945 NA non-coding upstream 199856 13691346 ~ 13691568 (+)
G98944 NA non-coding upstream 200505 13690508 ~ 13690919 (+)
G99006 NA non-coding downstream 65629 13989942 ~ 13990153 (+)
G99260 kif23 non-coding downstream 333599 14257912 ~ 14260742 (+)
G99261 NA non-coding downstream 337128 14261441 ~ 14262517 (+)
G99276 ighmbp2 non-coding downstream 393284 14317597 ~ 14318654 (+)
G99362 NA non-coding downstream 706022 14630335 ~ 14631361 (+)
G98972 NA other upstream 102034 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 175658 13691607 ~ 13715766 (+)
nlrc5 nlrc5 other upstream 1032890 12837299 ~ 12858534 (+)
uri1 uri1 other upstream 2701315 11151714 ~ 11190109 (+)
vps9d1 vps9d1 other upstream 2724622 11145154 ~ 11166802 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other downstream 8226 13932539 ~ 13956351 (+)
skor1b skor1 other downstream 110915 14035228 ~ 14042452 (+)
G99341 synm other downstream 596488 14520801 ~ 14524480 (+)
carmil2 carmil2,rltpr other downstream 1376169 15300482 ~ 15346146 (+)
G100306 NA other downstream 2425144 16349457 ~ 16349787 (+)

Expression


Co-expression Network