G99188 (smad3,LOC108264458,LOC107686302,LOC108424035)


Basic Information

Item Value
gene id G99188
gene name smad3,LOC108264458,LOC107686302,LOC108424035
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13944751 ~ 13946911 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117597
CTGAATGTCTGATCAGTTACAGGCATGGCTGTATTTAAATAACCAGCAACATCACTGAGCAACTGGTATTTATTAATCTTCATTACCTACACTTGTTTGTTCGACCTGCCTATACACATCAGTGAAtaccaatttatttatttagaactTTTTTAAGCAGTATTAATAAATGAAGCCCCATGTATGTGTTGGTTGAGTCAATCAGACCATCTGGTAACTTGCATCTTTCTTATTTACAGCACTTTCTCCTAGACAACTACCTACAATGTCTGCTGCCGTACTGACCAGGCACTCTACAAGCTAATGCTAGGCTAAAAGCCACAGACAAATTTGTTTACACGTAACCCAAGCACCATCTAATTTCAGCATCATCTAATTTCAGTTCATCGGATTAAGCAGACATGAAAGCAGAATACTCAAATATGATTCAAGCCTGATTTGAGCTGTGTAACCAGGTTATTTAGTGCATGTGCATCTGTGCATGCGTGCAAGTTGGAGAGAGTAATAAAGCTTTGAACTGGATATCCATAGTTCATGTCAACTAGATACTGCAAGCAGATACTTCCTTGCATAGCATTCTTTCACAGATAGAAGTGCTATCGTTATGACgtaatacacattttaacaaCATGGATTTCACATCTGTAAAGTAACACACTACTTGGATAGTtttttactaaatattttatcacttttattcAAGTccttatttagatttttttttacttgcgtcatattttatagtaacagtatttttttagCAAGCTTATTAAAAGAAGTTCAAATAATGATCTAGACTCTTTGAGATTTCTGATTTCTTGACTCTAAGTGCTCATGAACATTCTCATAAATGTTGATCATACATTTATACCTACTTGTCaatggttctatttcccaaaatctACAAGGCTGCATGAAAGTGAAATACCACTCGTGTCTCATGCACTTTCAGCAAGTTTATTAAGGAGCCCCAGATCCTCCCTTTAATTATGGCAAAACAGTTTAAATCATTAAGTTGAAAAGACAAGAGACAAGAGACAAGAACGTACACGCAGCCTAGAGTGCTTGTCTGTATGACTATGTGATTTTTCTCCCCACTTTGCACTCACCAGGTATGTAGTTGATCAGAGGCTCTATGCCTGCAGGAAAGTTGGTGTTCTCAGGGATAGAATGGCTGTAGTCATCCAGCGGGGGAAACTCAGCAGGGATATCAGTGTGTCGGGGAACCAGTACTGGAGGAAGaactgcgcgcacacacacacaaaaagtggTAATCAAAGACGAATCAACACAAGACTAATTATAGCATTCTGTACCATTTGATAAGGGTGATTAAATCTAAAGCGTCAAAGAATAACAAATGTGCAGGACTTTGTCTCAAACATAGCTCTGCTAAGAGGGCTCACCTGGTGTCTCCACGCGCTGGTAATGGTAGGGGTTGACACACACCTCGTCCTTCTTCATGTGGAAAGCGAACTCGCACTGGTCTATAGCACGCAGCTCGTGGTGTGACTGCAGGTCAGGCCAGCGCCATAGCCGGCAGTAGATTACATGAGGGAGGCCTTTTCTGTGAGACACCTGCAGACGCCCATCCAAAGACCTAAGCAAGATGGAGCACATCATCATTATAAATGGACTGAAGACTCAGCTTGACCTCATATTCATGTGCTATACTTTGGAGCAATAATAAACCTTACATATCTGATTTCTGAAGCATGGCCATTAAAGTTCTAAGCTGATGCAGTGGTTTTGAAATCATAAATTCACTAGCTAGTGCATTGGACAACTGAAAGCTCTAGTGGACTTGTTTACGCCAAAACAATGGCAAGCTAGTTATAGTTAGAGGCACTAATAAAGagggataagaggaataaaagagaaGGAATGACTGTGGCCATAGTCCTCATTCTCacctgatcattttttttttttgatgcagCACATGGTGTTTGCACAGTAGCAAGTCTTTGTCTAATATTTTGGCTAAAGAGCTGTGGTACTCTCTCCTCACGTTGCATTCAAAAATTCATTAGACTCTGGCTGTGTCTTCATTTTAATGTGCTTGACAGCAAGCTGACTGTGTGTTGCACTGTACtgaattttgctcattttgtgAGTACTTCCTCATCCCTGCCTGTTCCTCATTCTAAAACTGCTGTCT

Function

symbol description
smad3 Enables several functions, including DNA-binding transcription factor binding activity; SMAD binding activity; and enzyme binding activity. Contributes to DNA-binding transcription factor activity. Involved in several processes, including cell surface receptor signaling pathway; positive regulation of nitrogen compound metabolic process; and regulation of gene expression. Located in chromatin; cytosol; and nucleus. Part of heteromeric SMAD protein complex and receptor complex. Implicated in Loeys-Dietz syndrome 3; Lynch syndrome; and pancreatic cancer. Biomarker of cervical squamous cell carcinoma; endometrial cancer; and prostate cancer.

NR:

description
PREDICTED: mothers against decapentaplegic homolog 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117597 True 2161 lncRNA 0.40 1 13944751 13946911

Neighbor

gene id symbol gene type direction distance location
snapc5 snapc5,LOC107672220,LOC107596973,LOC107686356,LOC107583772 coding downstream 134758 13806984 ~ 13809993 (-)
lctlb lctl coding downstream 139577 13797624 ~ 13805174 (-)
LOC113534839 NA coding downstream 155904 13788751 ~ 13788847 (-)
LOC113534840 NA coding downstream 156552 13788102 ~ 13788199 (-)
LOC113534844 NA coding downstream 156965 13787657 ~ 13787786 (-)
aagab aagab coding upstream 9522 13956433 ~ 13961386 (-)
kif23 kif23,LOC107672274,LOC107686310 coding upstream 309636 14256547 ~ 14265263 (-)
paqr5a paqr5,LOC108263988 coding upstream 319173 14266084 ~ 14276651 (-)
LOC113534338 NA coding upstream 342114 14289025 ~ 14294440 (-)
ighmbp2 ighmbp2 coding upstream 368924 14315835 ~ 14324438 (-)
G99184 LOC101268919,LOC101159109 non-coding downstream 11817 13932553 ~ 13932934 (-)
G99166 NA non-coding downstream 100514 13843999 ~ 13844237 (-)
G99165 NA non-coding downstream 101522 13842819 ~ 13843229 (-)
LOC113534347 NA non-coding downstream 160014 13782775 ~ 13784737 (-)
LOC113534852 NA non-coding downstream 161127 13783555 ~ 13783624 (-)
G99187 smad3b,smad3,LOC108264458,LOC107738715,LOC108424035,LOC107686302,LOC107672260 non-coding upstream 3236 13950147 ~ 13950721 (-)
G99202 NA non-coding upstream 88356 14035267 ~ 14035541 (-)
G99396 NA non-coding upstream 332532 14279443 ~ 14630745 (-)
G99408 NA non-coding upstream 382016 14328927 ~ 14334134 (-)
G99401 wee2 non-coding upstream 402807 14349718 ~ 14355619 (-)
c6h15orf39 c4h15orf39 other downstream 382177 13550680 ~ 13562574 (-)
G98770 NA other downstream 892440 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1520773 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1539470 12396507 ~ 12405281 (-)
admb NA other downstream 1599299 12311822 ~ 12345452 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 389025 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1400255 15347166 ~ 15357563 (-)
G101178 NA other upstream 4240536 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6033158 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 6448955 20395866 ~ 20416574 (-)

Expression


Co-expression Network