G99261


Basic Information

Item Value
gene id G99261
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14261441 ~ 14262517 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117678
TCCTCTGTTGATTTCACTTCAAGCTCTGTGCACCCAGCCACATACATGTTGTGGTTTTGATCTTCACGTAAAATCTTGGACTGGGGTGGTCTAAAAGGAGCGTATACaacattttaacacacttaTCTTATGTTTAGAGACAAACAAGCACAAAAATAGTTTTCCAGCCATGCTGCAATGGGTGATAACCTGCTTTACAGCAGAAGCAGAAGACAAATGGGAAACAAACAAGTTGCAAGACATTGTCTATAAGCCAAAaagcagaggggaaaaaagctcGGACGACAGCATTGCACATCCCAGCTACACAGTGAAAAAGACAGGACATTTTGCTCAAGTATCTGTCTATCTACAGGCGTTATCCACTGGTCACGTACATGAACTCAGTGTTGTGCCGCAGAGGTGTCCCTGCACCATTCCACCTAGCAAAGGAACACAAACATTTAGACTGCAAGCTAAAGTATGATAGATACTTAATGTCCAAAAAGAGAAATTTTTAGAAAAGTAGGGCCAAGTTCTCAATAGAACAGCCATCATGTTCAACCAGAGCCTTCATTTAACATACATGTAAATGATAATTACACTCTGTGTGCTCTTCACACAATGATTCctacacatataaataaaagcaaacaaaatctAAAGTAACCAAAACCATGAGCTTACTTTGGCCTTATTGGGTCAAATGGAGTCTCCTCCAGGAGATCATAGATGTAGTTATTGTATATCTCTATATAGGAGACAAACACGCTGTAGCTACTGTCCTCATCCACCCCGTCAGCCTTAGAAGCTTCTTCTGGACTGATCATGTCAGCAAACTCTGGATCAACTCTTTGccTGAGGATGGAGTCTTTGGTACAGATGGCTGACTCTCTTGTTTCTGTCGTTCCAAAAGAGCATCCACCTGGTTTTGCACTTCCATGCCATTCTTATCATCTGGCTTGAAGACCTGAAatataaattaacaaataattaaataaatagtagaATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117678 True 993 lncRNA 0.40 2 14261441 14262517

Neighbor

gene id symbol gene type direction distance location
tle3a LOC108264729,LOC108424090,LOC107596960,LOC107686309 coding upstream 75757 14164588 ~ 14185684 (+)
uacaa LOC108264780 coding upstream 155092 14091750 ~ 14106349 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 172542 14078741 ~ 14088899 (+)
pias1b pias1b,pias1,LOC108264782,LOC108424062,LOC107596961 coding upstream 187485 14045883 ~ 14073956 (+)
c6h15orf61 c4h15orf61,zgc:162898,cunh15orf61,LOC103025902,LOC107738714,LOC107686305,LOC107583911,LOC107718314 coding upstream 273256 13986824 ~ 13988185 (+)
kbtbd4 kbtbd4,LOC107596956,LOC107738697,LOC107686314,LOC107708223,LOC107672308 coding downstream 33194 14295711 ~ 14300664 (+)
rapsn rapsn coding downstream 42146 14304663 ~ 14314817 (+)
agk agk coding downstream 62559 14325076 ~ 14335323 (+)
wee2 wee2 coding downstream 86650 14349167 ~ 14354920 (+)
bida NA coding downstream 93376 14355893 ~ 14364805 (+)
G99260 kif23 non-coding upstream 699 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 271288 13989942 ~ 13990153 (+)
G98996 NA non-coding upstream 337128 13891424 ~ 13924313 (+)
LOC113534555 NA non-coding upstream 415296 13837717 ~ 13846145 (+)
G98960 NA non-coding upstream 476666 13740823 ~ 13784775 (+)
G99276 ighmbp2 non-coding downstream 55080 14317597 ~ 14318654 (+)
G99362 NA non-coding downstream 367818 14630335 ~ 14631361 (+)
G99516 LOC108263939 non-coding downstream 463101 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 467467 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 763970 15026487 ~ 15027086 (+)
skor1b skor1 other upstream 218989 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 305090 13932539 ~ 13956351 (+)
G98972 NA other upstream 472051 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 545675 13691607 ~ 13715766 (+)
nlrc5 nlrc5 other upstream 1402907 12837299 ~ 12858534 (+)
G99341 synm other downstream 258284 14520801 ~ 14524480 (+)
carmil2 carmil2,rltpr other downstream 1037965 15300482 ~ 15346146 (+)
G100306 NA other downstream 2086940 16349457 ~ 16349787 (+)
G100345 NA other downstream 2337740 16600257 ~ 16601067 (+)
rgma NA other downstream 2395084 16657601 ~ 16680793 (+)

Expression


Co-expression Network