G99276 (ighmbp2)


Basic Information

Item Value
gene id G99276
gene name ighmbp2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14317597 ~ 14318654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117693
GTTACACCTTTGTTCTTTTTCGTGGATGGGCCTTTGCTGTCTTTATGCTCTGTCTCCTGTCTTTTGCTCTGAATTTTCTCCTCCCGTTTTTCTTGCTCCCGGCGCATACGCTCCAAATGCAAGCTTTTCAAATCTAGAGCAGGCTTTAGTGGTTGCCTGTTGGATTCTTTTTCTGTTAGTTCCTCTGGAGTCTGGATTTCTGGCCTTGTGGACACTGATTCCTCTTCCAGTCTCTCCTCTGGCTCTGCCACTGGTTTGGAAACAGTGATATGACGCTGTTTTCGGTTCCCTTGCTCACATGCTTTAGTTCCAGCTCTTCACAGAGTTGGTGGACTAGGAGGCGTTCATGTGAATTCAGAGAGGAAGGAAACTGAAGCTCTGTCTGACTTTGGTTGTCCAGAAAGATAAGCAACTGCTGCCTCATCTCCTCTTTCTTAATTTGAGACTCAATTTGATCATCTGCTTTTGGTTTGGGAAGGCTTGACTTTAGGTTACTGCTGATGTGGGGATCATCCTTTGATTGGCCGTTTCCTTTGCTCTTGCTCTCAGAGATTTTATTGTGCTTGGTCTCATTTCTCTTGCCTTGTTGGttttttgcctttgttttggtgGAAGATGCTTTAATGTTATTCTGTTCGTCTTTAAAATCGCGGTGGTAGTTTTCAGGAACCAGGTCCTCTAGGTACTCGAAGGCAGTGCGAACCTCCCCGTGTTCAGACATGTAGTCAACCAAGCTCCTGAGAAAGTCATGGTTTCGGACAGTCTGGGAATCACATACCACTACAAGCTGTCGTCTGGCACGTGTTACTGCCACGTTGATCCTCCTGTCCTCCGCAAGAAATCCAACCTCCTTTTCTATTAGATCTAACCAGAGACAGCAGCACTGCCTCCTTTTCTCTGCCTTGAAAGCCATCTACAGATTTGATCTCCAGATCAGGATACTCATTTGAGAGTTTCTGTCTTA

Function

symbol description
ighmbp2 Predicted to enable 5'-3' DNA helicase activity. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Orthologous to human IGHMBP2 (immunoglobulin mu DNA binding protein 2).

NR:

description
PREDICTED: DNA-binding protein SMUBP-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117693 True 964 lncRNA 0.46 2 14317597 14318654

Neighbor

gene id symbol gene type direction distance location
rapsn rapsn coding upstream 2780 14304663 ~ 14314817 (+)
kbtbd4 kbtbd4,LOC107596956,LOC107738697,LOC107686314,LOC107708223,LOC107672308 coding upstream 16933 14295711 ~ 14300664 (+)
tle3a LOC108264729,LOC108424090,LOC107596960,LOC107686309 coding upstream 131913 14164588 ~ 14185684 (+)
uacaa LOC108264780 coding upstream 211248 14091750 ~ 14106349 (+)
morf4l1 morf4l1,LOC107596963,LOC107686360,LOC107738770,LOC107708218,LOC107672187 coding upstream 228698 14078741 ~ 14088899 (+)
agk agk coding downstream 6422 14325076 ~ 14335323 (+)
wee2 wee2 coding downstream 30513 14349167 ~ 14354920 (+)
bida NA coding downstream 37239 14355893 ~ 14364805 (+)
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding downstream 107878 14426532 ~ 14453076 (+)
pgpep1l pgpep1l coding downstream 210222 14528876 ~ 14533258 (+)
G99261 NA non-coding upstream 55080 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 56855 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 327444 13989942 ~ 13990153 (+)
G98996 NA non-coding upstream 393284 13891424 ~ 13924313 (+)
LOC113534555 NA non-coding upstream 471452 13837717 ~ 13846145 (+)
G99362 NA non-coding downstream 311681 14630335 ~ 14631361 (+)
G99516 LOC108263939 non-coding downstream 406964 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 411330 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 707833 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 736613 15055267 ~ 15058771 (+)
skor1b skor1 other upstream 275145 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 361246 13932539 ~ 13956351 (+)
G98972 NA other upstream 528207 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 601831 13691607 ~ 13715766 (+)
nlrc5 nlrc5 other upstream 1459063 12837299 ~ 12858534 (+)
G99341 synm other downstream 202147 14520801 ~ 14524480 (+)
carmil2 carmil2,rltpr other downstream 981828 15300482 ~ 15346146 (+)
G100306 NA other downstream 2030803 16349457 ~ 16349787 (+)
G100345 NA other downstream 2281603 16600257 ~ 16601067 (+)
rgma NA other downstream 2338947 16657601 ~ 16680793 (+)

Expression


Co-expression Network