G99341 (synm)


Basic Information

Item Value
gene id G99341
gene name synm
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14520801 ~ 14524480 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117779
GAAAAATTTTTTGGAGCCAACCAAACAAAACTGATTCCAAGAGAGCATTAGTGTGAAACAGAGAAGAGTATATTTATTACTATCGAATAactatagtacagtatagttaTTTATTGTTGCAAATAATAATGTTCATCAACACATGTTCATAAatacccacacatacacacctcttTTGGACGCATGTTACTACAGAACTTTAAAAAGAGTCCTACTGGACATAAACTGGCGTcaccctctctcttttcttctcactCACTCCATTACCACCATGTGAGGCATGAGTAAGGATCCCAAAATACATTTGTTATGCAAACATGCTGTTAGACACTACCTCAATGACCACTAAACTGACACTGTTGCTTTTTAAGAGAAACctgctttttcactttttcatctctctgtctcactcagtCCTGAACAATGGAAAGGCCCTTACGCTGAAAGCGCAGGGAGGCTGGATTAGTGAATGCCATGCTAATGTTATTTAAGGATTATAGGACCTAAGAAGGACAAGAAGGATAGTCTGAAATCTGGTAGTCACAGAGCCAGATTCTGACAATAATCAAGTCAGATTAGGGGCTATAAACAACAATCAGTACTCAAAATAAAATGGAGCTCCAGTTTTAGTGCACTAGAATCCAGCAGTGTTTAGTTATTTCCTTCAGAGACACATAATTCTATTCACCAGTTAATTAACAGTTTTATGGGTGTCTTTGAGCAGGAAAATCACCTAATTTTGCTCACACAGAATAGGCACAGGCAAAAGAAACAGGCACCTCTGCTCTATGTTTGTTAAGGTGTTTTTAAGTTTTCTTAGTgtcataaatacaaaatatgtgTGAATTTATACTAGATTAAACTCTGGACCTTATTAAGTGTAGATGacagtaatttaaaaatgtgttacagCAAAACAGTATCATCATTAAAGTAAAAGATGACAGTGCATATACTAAAGAACACACAGTAGAAACATGACCCAGAAACATAACGCAGTGATTTGAATACAGGATTAGCAGTATGTTCTATCTGAATTGAAGTGTAGCTTAAAATAATTTGTGTAGTGTTACAAGAGACAGTGATATCCTGTAATCAATGATATTAAATGCTCTTTTATTAACTTcagtacattttattacatgtcATTCTAGACAAGACATGTAATAAATGTGACAAATTCCGTGAGGcctacacagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcacagagCCAAGAGGGTCTAAACTCGTAAATCTAATTGTGTAGAAAGTAAAGCTTTAAGTCCTTGATATGTGCTGCTTTCTATATGTATTGTAAAAACAATGAGAGTAACAAACATTTCTCCATACCTGATTATATAATACGTGGTTTTATTTGGATCTCAGTTATAGGTGGTTTTATCTAGATCTCAGTTAGTCCTCCTGGGGGCTTTCAAGATAAACAGTAGCTATTCTTTTCTCCTGGTAGATTTTTAATGAAGGGTCAGTCTTCTGGGTCTGTACAAACTCTTGCACATTGGCTCCATTGCCTTTCTGATCTTGAGAATCCATCCCTTCTTTGCCTATCGCAGACGCGCTGTTGTTAATACCCATTTGGAACGTGAAGGATGTCTCATTAGGCCCCAGCCTGATGACCTTCTCTGTCTTGCTAACTTCACTACCTGAGCTCAAAGCTTCGGTTTCCTCAAGGCTGGACATCCATGGCATTTCCCCTTTTTGGACCTCCTCTGTGGAAAGTCTGATGGTATACTCATCATCAGCTTCAGCACTGTGCGCCTGGTGGAGGTCAGAGCTTGAGGACTGCAGTGCTGCCATCACCTGTTCCTGTAACAGGTCATCTGCCTCATTTTGCAAGAGTCCAGAATCCTCCAGACTCTGGGAAATATTAAGCTCTGCCACAAAGGTCATTGTTCCATTGTCTGGAGATTGTTGCACTTTCTGGATGTTAACAGACAGGTTCTCAGAACTTTGACCAGCTTTGGTGAAAGAAACAAGTTCTTCTTTTAGCTCTCCAGACACAGTGCCTTCTAGCTGCTCCAGTGCTCCCTTTAGCTGTTCTCTGGGGTCCAATGACTCTTCTTTCAGGATCTCCAGCATAGACTCTTGAATTCTGGGAGGAACATGCACCTCCTCTTCTATAATACACTCTGGAATTCCAGTGGTGTCTCTTTTGACATATTCAGGTGACTCCCTGTTATTTTCCCCTTCATCAGAGTACCTCCTTTTTGTAGGCAGACCTTCTTCCTGGTAGTATCTCTCATCTGAAAGGTCTTCCACCACTCCATAATGTCCATAAGACATAAATCCTCCACCCTCCTCTGAACCAGACATGTTCTCTTCAGGGGTGGAAACAAAGTATTCTTGTGTTTCTTGGCCCTGAGCATAGTATGGGAGGCTCTCATCTCTGGACACTTCCTGCACCTGCACAAATCCACTCTTTACATACTCTGAGGCTTTCATAGACTCGTCAGTGTTTTCATGTTGTTTAGCTGGCTGAGGTTCATTCTCTGGTTCTTCAATGTGAAAGAACATTGATGAAGGTTGGAAGTACGCTTTGGACTCAACTTCTACAGTCTCTTCAATTTCACCTTCCCCTTCATCGGTATGAGATTCCAATGGTGCCTCCATTATCTCCACTTTAACCGACTTGTTTTCTAAGCTTTCACCTTCAAGACCAAGACGCAGAAGGTTCTGAATCATGCTTCCTGTTGGGGTTCCTTCAATATCCTCCAGAGAGACTTTATGTACCCCCTTACTAAGGAGTTCATCAAGAGCCGAGTTGTCTGACACATCCAGGTCTTCTTCCACTTTTGACTGCAGGACTATCTGAGTCTTGGTGCTTCCATCCTCTTGCTCTGTTTTCTCTACATGGTATGTGATCTTTGAGTCAGCAGATGAACTGAGATTTGTATCAAAGCCAGCAGGCTTTATGACCTTCTCAATAATTTCTTCCATGGACACTGAGTCCAAAACTTTTTCCTCACCTGCAAATACCTTTGGTCCCACATTTCCAGAATCTTTCAAATCTGTCTTATCTTCTTGGTTGGATTCCTTATGCTGGATAAATGGTGTTGCATCAGGTTGCACTGTTGCTTTGGCATGATCTGCTTCTGTACTCTGATCTTTTCTTTCATCTTCCTTAACATCTTCCTCAACAACTTTCTGATGGGTTTCTGCATTAGTGTTCAGGCTCATCATAGGTGGTGCCACAACTCtcactgattttatttctattgCTGATGAGGTAGTGGGGAatgatttgttttgtatttctgtCTGGAAAAGATCAGGCGAACTCCTTGGTTGGCTTTTAGACACACctttgatgattaccttctgtTCTTCCATCACTTCTTTGTTAGTCTTACTAGCAGAGACATCAGGTTTGGCTGCACTTGGTGTAACTGAAGCCTGTTTTGCTTTGCTGAAAGCAATCATGTCTCTTCTTGCAGCAGGACTTTGTTGGGCATGGTTTGAAATAGTGATAGGCAAAATCCTGGAGGTTCTCATGCTGGAAATGGGTTCTACATTCCAGACATCATACCCTATTAAATTCCTTCTCACTTCTGGTCGACTGGCTGTGATGGTAGAGACTCTTGGAGTGTAAGGATGGGCTGGCAAT

Function

symbol description
synm Predicted to be located in intermediate filament. Orthologous to human SYNM (synemin).

NR:

description
PREDICTED: synemin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117779 True 3644 TUCP 0.40 2 14520801 14524480

Neighbor

gene id symbol gene type direction distance location
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding upstream 67725 14426532 ~ 14453076 (+)
bida NA coding upstream 155996 14355893 ~ 14364805 (+)
wee2 wee2 coding upstream 165881 14349167 ~ 14354920 (+)
agk agk coding upstream 185478 14325076 ~ 14335323 (+)
rapsn rapsn coding upstream 205984 14304663 ~ 14314817 (+)
pgpep1l pgpep1l coding downstream 4396 14528876 ~ 14533258 (+)
fam169b fam169b coding downstream 116480 14640960 ~ 14648967 (+)
arpin arpin coding downstream 129435 14653915 ~ 14657137 (+)
kmt5b kmt5b,LOC108264420 coding downstream 152064 14676544 ~ 14686478 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding downstream 171297 14695777 ~ 14709427 (+)
G99276 ighmbp2 non-coding upstream 202147 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 258284 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 260059 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 530648 13989942 ~ 13990153 (+)
G98996 NA non-coding upstream 596488 13891424 ~ 13924313 (+)
G99362 NA non-coding downstream 105855 14630335 ~ 14631361 (+)
G99516 LOC108263939 non-coding downstream 201138 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 205504 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 502007 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 530787 15055267 ~ 15058771 (+)
skor1b skor1 other upstream 478349 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 564450 13932539 ~ 13956351 (+)
G98972 NA other upstream 731411 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 805035 13691607 ~ 13715766 (+)
nlrc5 nlrc5 other upstream 1662267 12837299 ~ 12858534 (+)
carmil2 carmil2,rltpr other downstream 776002 15300482 ~ 15346146 (+)
G100306 NA other downstream 1824977 16349457 ~ 16349787 (+)
G100345 NA other downstream 2075777 16600257 ~ 16601067 (+)
rgma NA other downstream 2133121 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2875946 17400426 ~ 17443468 (+)

Expression


Co-expression Network