G99362


Basic Information

Item Value
gene id G99362
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14630335 ~ 14631361 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117806
agagagtgtactgtgcaaaagtctgagGCACCCTTTTTTATTACGaactttattatagatttttattttacgacttctacattattgattccgtacaaaaacattttatattcaaaacattagttttccagcacaaaattaaatgttacagaaaaatgtttgtatgtcagtaaagaaagcagcatattacataagagacacttttcagacaaaaaacataatgaaggctgctgggttttgctgcaaaaataagaagagagtgtgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttacagctcatttccttataaaactgcacacattgtacctgagactactattttttttaaagtgaaggatcgtcacaccaaatattgactttgtttcatttattactgtttactgctctttatagtattttttttaatgtagaaacatttagtttcattatttttgaaggcatgtttgctctacagcatttctttacatgtatgtgtatatatatgtgtgtgtgtgtgtgtatacacacaatactgtgcaaaagtcttaggcacatgtaaagaaatgctttaCAAGAAAGGACCAAAGTAACTACAGTAAGGTCAGTGTGTattcacaatacacacacttattcttAATCTTATCCCTAATATGCTGAACCCAGCTCCGTTAATGTTTCTTGTCTTATCACATTGACAAAAATGCATTACATGACATGAATCACTTAAATGTTTGTATCCCTGGATATTACTGTCGGTCTTTAACATTTCTATCATAAAACAGTTGTCaaatgttaaactttagctacTTAGCTTACATCTCTTTCACCACTCAAACTGAACTTCTGTGAGCATTAAAGCCCCGCCTTCTTTCATCTGATTGGTCATCTCAGTCATTTTGACATTGATGAGCTCCGCTAGACTGCCGAGACAGACCACcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117806 True 969 lncRNA 0.34 2 14630335 14631361

Neighbor

gene id symbol gene type direction distance location
pgpep1l pgpep1l coding upstream 97077 14528876 ~ 14533258 (+)
cftr cftr,LOC107738689,LOC107596947,LOC107583749 coding upstream 177259 14426532 ~ 14453076 (+)
bida NA coding upstream 265530 14355893 ~ 14364805 (+)
wee2 wee2 coding upstream 275415 14349167 ~ 14354920 (+)
agk agk coding upstream 295012 14325076 ~ 14335323 (+)
fam169b fam169b coding downstream 9599 14640960 ~ 14648967 (+)
arpin arpin coding downstream 22554 14653915 ~ 14657137 (+)
kmt5b kmt5b,LOC108264420 coding downstream 45183 14676544 ~ 14686478 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding downstream 64416 14695777 ~ 14709427 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding downstream 153579 14784940 ~ 14877479 (+)
G99276 ighmbp2 non-coding upstream 311681 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 367818 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 369593 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 640182 13989942 ~ 13990153 (+)
G98996 NA non-coding upstream 706022 13891424 ~ 13924313 (+)
G99516 LOC108263939 non-coding downstream 94257 14725618 ~ 14725938 (+)
G99518 NA non-coding downstream 98623 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 395126 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 423906 15055267 ~ 15058771 (+)
G99766 NA non-coding downstream 539971 15171332 ~ 15173435 (+)
G99341 synm other upstream 105855 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 587883 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 673984 13932539 ~ 13956351 (+)
G98972 NA other upstream 840945 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 914569 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 669121 15300482 ~ 15346146 (+)
G100306 NA other downstream 1718096 16349457 ~ 16349787 (+)
G100345 NA other downstream 1968896 16600257 ~ 16601067 (+)
rgma NA other downstream 2026240 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2769065 17400426 ~ 17443468 (+)

Expression


Co-expression Network