G99408


Basic Information

Item Value
gene id G99408
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14328927 ~ 14334134 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117878
gtaatttgccaacaaatgtttaatgtttaaaggtttatagttagattttatgttgtggaaggTCCTTGTTCTCATATAtgttatagctgtgataaacagtcattctctcatcagcgtctctctctctctcaaaaagtGCTGCctgtcatgttagtgagaaagcAAAGCATAAACCCTTAtgatgagctgttactatagaaacaataatgtattagaacaagcgcattaatattaacctctcgttcatgttacagccagaactactgtcccAGCCGTGCTGTTAcacgaaaataatgcacaccttctgaccaatcagattagagcaTTGACCTGCGCTGTGGTATACTCAAGCAAcatcacacaagcaagagtgtggttatactgaatatcggcatggcAGTGATTCAGGCGTAGGCACCAGGTTGGaggtaatcacagctgtgctgatattcagtattaCCGCACAACTgcaagtgtgatattgcttttatacaacagttttataaataagaaatgaatgagacataatatggccaaatggtttctttatttttgctccatgatcgatcccaaagaagccacattCACTAATAACCCttcggctagctggctagctcacaatgatttgtacattcccaaTAAAGGTGCATTTGGTGCATTttatcttcatctgacaagctttcatattttaggttagaagttatattcatgaaaaatgtatcgtTTGCCAtctctgctgatgatgtcgctaactctactgtagtaacggtttcagtggaactgttgctagaaattaaattttacgtgatgaacacagacaagtggagtgatacacacagtaaaacatctcAGTGtggttatattaaatataggcactcttggaatgctgtTCGTCCAATccaattagtggaccagaactaactgttgtataaagaaaattaattaacctTATGACCACCCAGATGCAAGAATTCATCAGTATCAACTTTGGTATGTTGTCGAACTAATAACCGATACTTTTAACACTTTTCACAAAAAACTAATCCTCACCTGGGGCAAACTGAGCCGACATACGCTTGCCTCTATCTGAAGTGCCTTCTCTGTGCACTCCAATGGGTTTTCAGCTTTTTTAATCctgcacacaatcacacaaatgattataaatcattcactgtaacaGTCAACAAAATACATCATCCCCTGAATAATAGCTCTGAGCAAATAAAGCAGTTTTCATTAGTTTTCCCaagttaaaatattacattaaaataaatacccTTCTGTGATGAACTGTCCAACTGTAAGTGTGTCTGGCTCCACAGAGAGCACCAGGGAATCATCTGTCCGCCTTTTCACCGGATTCCTGTTCTGTGTGCTGATTGTGAGCTCCATTGTAGAGATCTGCTTATCCTCCCAGCGCTCTGGTTCTGCCTCTACTTGCGGCTCTGAgcccgcccacacacacacacacacacacacacacacacacacacacacacacacacacacaaaatgcactgAGACTTCAGCCATTACAACCTGTAGCAAAGGCAAATTTCACAGATGTACATCAATTCTACCTTCTGGAGGAGGCGTCCAGTAGTTTTTAAGTCTCCGATAGATGCGATAGAGCAGACTGGGTCTCACGGGCTTCACATCGGGCAGATCTGGGGGTCGAGGGATGGGAGGCAGGTACGAGACAGAAGCATGATGCATCTGTGGCCATTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117878 True 1730 lncRNA 0.41 3 14328927 14334134

Neighbor

gene id symbol gene type direction distance location
ighmbp2 ighmbp2 coding downstream 4489 14315835 ~ 14324438 (-)
LOC113534338 NA coding downstream 34487 14289025 ~ 14294440 (-)
paqr5a paqr5,LOC108263988 coding downstream 52276 14266084 ~ 14276651 (-)
kif23 kif23,LOC107672274,LOC107686310 coding downstream 63664 14256547 ~ 14265263 (-)
aagab aagab coding downstream 367541 13956433 ~ 13961386 (-)
bcl2l13 bcl2l13 coding upstream 32673 14366807 ~ 14384784 (-)
wnt2 wnt2,LOC107708232,LOC107738769,LOC107596948,LOC107660945 coding upstream 55765 14389899 ~ 14398268 (-)
asz1 asz1 coding upstream 67734 14401868 ~ 14422777 (-)
cttnbp2 cttnbp2 coding upstream 120203 14454337 ~ 14502230 (-)
synm synm coding upstream 186533 14520667 ~ 14529857 (-)
G99202 NA non-coding downstream 293386 14035267 ~ 14035541 (-)
G99187 smad3b,smad3,LOC108264458,LOC107738715,LOC108424035,LOC107686302,LOC107672260 non-coding downstream 378206 13950147 ~ 13950721 (-)
G99188 smad3,LOC108264458,LOC107686302,LOC108424035 non-coding downstream 382016 13944751 ~ 13946911 (-)
G99184 LOC101268919,LOC101159109 non-coding downstream 395993 13932553 ~ 13932934 (-)
G99166 NA non-coding downstream 484690 13843999 ~ 13844237 (-)
G99401 wee2 non-coding upstream 15584 14349718 ~ 14355619 (-)
G99433 NA non-coding upstream 114722 14448856 ~ 14453107 (-)
LOC113534271 NA non-coding upstream 176790 14510924 ~ 14519784 (-)
G99453 NA non-coding upstream 199686 14533820 ~ 14536010 (-)
G99482 NA non-coding upstream 267089 14601223 ~ 14603472 (-)
c6h15orf39 c4h15orf39 other downstream 766353 13550680 ~ 13562574 (-)
G98770 NA other downstream 1276616 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1904949 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1923646 12396507 ~ 12405281 (-)
admb NA other downstream 1983475 12311822 ~ 12345452 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 1802 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1013032 15347166 ~ 15357563 (-)
G101178 NA other upstream 3853313 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5645935 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 6061732 20395866 ~ 20416574 (-)

Expression


Co-expression Network