G99453


Basic Information

Item Value
gene id G99453
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14533820 ~ 14536010 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117933
agaaaaatctcactATTTTCTCATGTCTGTAGGAGACAAACCTCAGTCTCTAGATGAAAAAAACCTCATCAGCATCACAAACCACATGCTCTCTCCATTCAATAACGTGATTTCCGCAACCAGGAATCCTCAGATCATACAGCTGGCTTTGAGGGTTTGGCATTCATGGTTTTATTCAAATACTGCTGTGATTGATTTCCTGCCTAAACACAAACTGTTGAATTTCCAAAGCAAGTACaattaagggaaaaaaactgtatgtatgtataaatctTAAGCCAGCAAAACCACTATTCTccattgattttatttatttggctgaCCTTATATTTCATGATCCAGGCACGAAACAGTGACAGTTTGTGGCTCTTGTGCTATAAATATCATCTCATTCTGTTTAACTGTCTATGCTTTGGCACTGACAGAGAGCAGGTACTGTAGTGCCGTTCATCCCTACTCTAACTCTAACATCCTGCAGCAGACATACTGATGTGATTTTTAATCTGCTttcctcattaaaaaaaactgatttggCTCTTTCAGCCTGGCTATATTAGCACTGATCAGACCTGCCTCACTTTCAGCTGTAAAAGTACCACTGCATCATTCCTTCACCTTTCTACTAACACTTAACACTCACAGACCAGCCAAATATTTAAACGGTCCTGAGccagtttccattaaaaatatgtttagcatTATCATTAGCTCAGCATATAATGATTACACTGAGAGATTCTACACTCATTACACTTTCTGCTTGTAAGAAACTCAATCTTGActcaatatttcaataatttctaaaatgtaaaataagcaCCATAGTAAGTGCTTTTGCAAATTCGGTATTTAGGTATTTGGCCTTCTGAAGACTCCATGTTTCTGCATGCTGTGCTGATTTGGTTTAAAACTTtcttccttctgtttttttcccagacATTTCACATAGTCGTCTATCCCATCTCCTTTTCTAGAgattaaagaaagacaaaagtGTCTCAGTTATTGTGTCTCTATTCTGTAACGCTGCTCCCAATATGCTGCTCCTCTGTCTGTTTTAAGGCCTCTCCATTTCAACTGGCTATCCGGAGCTTTGGACAGGTGCTTGGTCTCAGCAGATTGGTTTTCCAAACATGCATTTACTAAAGCGAACAAGGCGTTAGACCATCAAAGCACGTTTCACACTTGGCAAAGGACTTTGAAGCACACAAAAAACTTAAGCGCTCCATAATATCTCACCAACCCTGAAAGTTCCGCTTCGTAGCACTTAACGTTCTTTCAATCTCTATTTGTAGTAGTCTTCTGTAAGAGGAATTTCAGGGCTAAAAATGTGGCCAGTGATGGGGAGACCTGGTTGGGAGAtcagattgctgaaaaagtatggtatggaaaaaaaaaaaaattcaatggtGTTCTGCGTGGGACAAGACGTAATCCAAATCACCATTCTTTGAAAGGCCTTGTACTTGTGTTGTTGCATATGTATATGGATGGGAGTGTATCACATGTAGATGTAGTGATGTAGATTTTGATGTCTttatattgagaaaaaaaaattactatagatcagtgatatttatttgtttgatttttttttctgtaatgaaatGGACAAAAGGGTTGGCTTGTTCCAAAGTGAATGTCAGTTTTTGTTGAATGCTGCCAAGGTCCCTAGTTAATTGTAGGTTACAAATCTactacagaaacacagacacaaataggACAGTGATGTCCAGTAGATTACGGGTAGTCATGAGAGAGATTTAACATgactagaatttttttttaaaaagagaaacgTTTACAGTAGATATAGCGCTTCTTGCAATGACCGTTCTTTGCAAACCTGAAGATCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117933 True 1857 lncRNA 0.38 2 14533820 14536010

Neighbor

gene id symbol gene type direction distance location
synm synm coding downstream 3963 14520667 ~ 14529857 (-)
cttnbp2 cttnbp2 coding downstream 31590 14454337 ~ 14502230 (-)
asz1 asz1 coding downstream 111043 14401868 ~ 14422777 (-)
wnt2 wnt2,LOC107708232,LOC107738769,LOC107596948,LOC107660945 coding downstream 135552 14389899 ~ 14398268 (-)
bcl2l13 bcl2l13 coding downstream 149036 14366807 ~ 14384784 (-)
igf1ra igf1r,igf1ra,LOC107672255,LOC107596941 coding upstream 69 14536079 ~ 14629951 (-)
anpepa anpep coding upstream 121960 14657970 ~ 14667731 (-)
si:dkey-12e7.1 si:dkey-12e7.1,LOC108264421,LOC108427511,LOC103035474,LOC107596938,LOC107583743,LOC107738678,LOC105904526 coding upstream 134303 14670313 ~ 14673362 (-)
syt19 LOC108263939 coding upstream 183875 14719885 ~ 14729606 (-)
si:dkey-12e7.4 LOC108264682,LOC108424351,LOC106560815,LOC107578981 coding upstream 194110 14730120 ~ 14735155 (-)
LOC113534271 NA non-coding downstream 14036 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 80713 14448856 ~ 14453107 (-)
G99401 wee2 non-coding downstream 178201 14349718 ~ 14355619 (-)
G99408 NA non-coding downstream 199686 14328927 ~ 14334134 (-)
G99202 NA non-coding downstream 498279 14035267 ~ 14035541 (-)
G99482 NA non-coding upstream 65213 14601223 ~ 14603472 (-)
G99493 NA non-coding upstream 112068 14648078 ~ 14648993 (-)
G99780 NA non-coding upstream 613393 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 624193 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 635301 15171311 ~ 15173434 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 186812 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 971246 13550680 ~ 13562574 (-)
G98770 NA other downstream 1481509 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2109842 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2128539 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 811156 15347166 ~ 15357563 (-)
G101178 NA other upstream 3651437 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5444059 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5859856 20395866 ~ 20416574 (-)
G102566 NA other upstream 6417592 20953602 ~ 20966910 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G80037 NA non-coding CI01000013 null 3708957 ~ 3712091 (+)
eurasian perch (Perca fluviatilis) G68222 NA non-coding NC_053117.1 CM020914.1 40483677 ~ 40484113 (+)