G99493


Basic Information

Item Value
gene id G99493
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14648078 ~ 14648993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU117973
CCAGATGTAGAAAAGGgagcataaaataaaagtcaaatgttttatttttttctccatcaaCCAAATGACACTtctataacagaaaaaaagctaCATTAAGCTTTAGCTGACAACTAACTAATATGGTTACAGATTAGTTTAAATTTGATTGTTGTTCAGTATTTTGTAAGGCTATGCACCTGTCAGTGACCTGCAGTTCCCATTCCTGCTATTAAATCCAGATGTAGCTTTGTTTGAATTGGAATTTGAACTTTGTTTTTCTTGACAAATGACCTTGCGATTTCAGTAACTGATGACTGTCTTTTCCTTCCTGGTGCCACATTAggcaagggggaaaaaattcaCATAAAGTGTAAAGAGGATTTACTCAAAAGCTAATAGAAGCTAACAGTACACACTGCACTGGTCTTCGTTAGAACACTAGAATTAGGGAATACTGAATACCTCaaaggtttttaaataaaaaaaggtttattatttatttatttttaatttagatttttggaCACTGTTCAACCAGTAAATTCAGTGTCACACTAACACAGTTATGAGTGCTAATCATGCTTACAGTGAACACGGCATTCATTTTCAAGACCTTGTGAATGTCTCTATATTCTTCTGCAATCACAGACGTTTTGGTTTTATGTTGTATTGCAACTACAAATCCCTGAGACAGTAGAACAGAATTTACTAGgatattttggtttttttacaCTTCTGTGGCGTCCCAGCCTGGTCAGTTGGTCGCTTCTCGACACATCTTCTCTGATGCCTGCGTGGTTCAGTGCCTGCGAGTCGTGGCATGCTCTTCTGGAAAAGAATGAAGACTAATTTGAGAATTTTTGAGTCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117973 True 852 lncRNA 0.36 2 14648078 14648993

Neighbor

gene id symbol gene type direction distance location
igf1ra igf1r,igf1ra,LOC107672255,LOC107596941 coding downstream 18127 14536079 ~ 14629951 (-)
synm synm coding downstream 118221 14520667 ~ 14529857 (-)
cttnbp2 cttnbp2 coding downstream 145848 14454337 ~ 14502230 (-)
asz1 asz1 coding downstream 225301 14401868 ~ 14422777 (-)
wnt2 wnt2,LOC107708232,LOC107738769,LOC107596948,LOC107660945 coding downstream 249810 14389899 ~ 14398268 (-)
anpepa anpep coding upstream 8977 14657970 ~ 14667731 (-)
si:dkey-12e7.1 si:dkey-12e7.1,LOC108264421,LOC108427511,LOC103035474,LOC107596938,LOC107583743,LOC107738678,LOC105904526 coding upstream 21320 14670313 ~ 14673362 (-)
syt19 LOC108263939 coding upstream 70892 14719885 ~ 14729606 (-)
si:dkey-12e7.4 LOC108264682,LOC108424351,LOC106560815,LOC107578981 coding upstream 81127 14730120 ~ 14735155 (-)
got2a got2,LOC107694944,LOC107596935,LOC107738675,LOC107726360 coding upstream 86420 14735413 ~ 14742680 (-)
G99396 NA non-coding downstream 17333 14279443 ~ 14630745 (-)
G99482 NA non-coding downstream 44606 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 112068 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 128294 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 194971 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 500410 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 511210 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 522318 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 527182 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 648612 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 301070 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1085504 13550680 ~ 13562574 (-)
G98770 NA other downstream 1595767 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2224100 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2242797 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 698173 15347166 ~ 15357563 (-)
G101178 NA other upstream 3538454 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5331076 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5746873 20395866 ~ 20416574 (-)
G102566 NA other upstream 6304609 20953602 ~ 20966910 (-)

Expression


Co-expression Network