G99516 (LOC108263939)


Basic Information

Item Value
gene id G99516
gene name LOC108263939
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14725618 ~ 14725938 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118021
GGGTTGTAGCTGTCCTTGACTGGGCGTGTCTGCCACTCCTGAAGCACACAAGTCAGCTGTTGCTCTTCATCCTCCACTTCTACCCACATCACTCGTACATGGACAAAGGGGTTCACACACTGGCTGAATGTTCGTGCCATTAGGCCTCTTGCCTCCAATACAGTCACCACCAACCGAGATTGCAGCTGATCATAGAAGAGTGAGAAGCGCAGCGTGCCCTGAATCTGTTCCTCATCCACATCCCCAAGACTGTCTGTACTGCTGGCCAGATCAGAGCTGCTGGACAGGCAGCAACTTAAGGGTTCCAATTCATCATTGTGG

Function

NR:

description
PREDICTED: synaptotagmin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118021 True 321 lncRNA 0.52 1 14725618 14725938

Neighbor

gene id symbol gene type direction distance location
chka chka,LOC108424340,LOC107738676,LOC107726368 coding upstream 16191 14695777 ~ 14709427 (+)
kmt5b kmt5b,LOC108264420 coding upstream 39140 14676544 ~ 14686478 (+)
arpin arpin coding upstream 68481 14653915 ~ 14657137 (+)
fam169b fam169b coding upstream 76651 14640960 ~ 14648967 (+)
pgpep1l pgpep1l coding upstream 192360 14528876 ~ 14533258 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding downstream 59002 14784940 ~ 14877479 (+)
necab2 necab2,LOC107672281,LOC106573751 coding downstream 159318 14885256 ~ 14969007 (+)
ranbp10 ranbp10,LOC107583731 coding downstream 405327 15131265 ~ 15170919 (+)
ripor1 fam65a coding downstream 489112 15215050 ~ 15291450 (+)
ctcf ctcf,LOC107583725 coding downstream 565986 15291924 ~ 15299579 (+)
G99362 NA non-coding upstream 94257 14630335 ~ 14631361 (+)
G99276 ighmbp2 non-coding upstream 406964 14317597 ~ 14318654 (+)
G99261 NA non-coding upstream 463101 14261441 ~ 14262517 (+)
G99260 kif23 non-coding upstream 464876 14257912 ~ 14260742 (+)
G99006 NA non-coding upstream 735465 13989942 ~ 13990153 (+)
G99518 NA non-coding downstream 4046 14729984 ~ 14730183 (+)
G99704 NA non-coding downstream 300549 15026487 ~ 15027086 (+)
G99705 NA non-coding downstream 329329 15055267 ~ 15058771 (+)
G99766 NA non-coding downstream 445394 15171332 ~ 15173435 (+)
G99786 NA non-coding downstream 450298 15176236 ~ 15180771 (+)
G99341 synm other upstream 201138 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 683166 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 769267 13932539 ~ 13956351 (+)
G98972 NA other upstream 936228 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 1009852 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 574544 15300482 ~ 15346146 (+)
G100306 NA other downstream 1623519 16349457 ~ 16349787 (+)
G100345 NA other downstream 1874319 16600257 ~ 16601067 (+)
rgma NA other downstream 1931663 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2674488 17400426 ~ 17443468 (+)

Expression


Co-expression Network