G99705


Basic Information

Item Value
gene id G99705
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15055267 ~ 15058771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118234
ctgagattagcacagaaacttaaactatattaaaacactttttaaaaaggtacgTTTTTAAACCCCTTTTAAAACCATCAGTCATTTGTGGAGCCCTCAGATGTTCAGGGAGGGCATTCCACAGGCGAGGAGCAGCGGCGCAAAAGGCTCGATCCCCAATGGTGCAGGTATTAGTCCTAGGGGGGAGGAGACGATGAGTGTTTGTGGAGCGGAGGGGACGTGctgaaatctgtggggtgaggaGTTCTTTAAGGACTGCTCCATCTGCTACTCTGCACTGACCTCTACACCCCAGCAAGACTGAGCAATGATGGAGGGAGAGTCATCCACACATCCACATGACCCATCTCCTATTCATGAGAAAGGAATAAATGTGTTTCAGCCAGAACGTTGGTAAGCAGGTAGGTCTGCTGCTGACATGCTGATGTCTGCTGCACATGACTCCCTTCAAAAAAGACCTTTCaagataaataaatttttcCTCATGAGTCACTATCAAAAggatgtatgctgtatgctttAAAGCAAAAGTTCCCAAGTCTGGCACCCCTATCCTGTACGCTTTAGTGTTTTCCCTCTTCTAACTCGTCGGATTCAACTAATCCACTACTTAACATCTCTTCCTGAGTCGAAGTGGGGGTAGTGAGCAGTGAAAACACTCAACTGTGCAGGACAGCGAGTACCAGGTTTAGGAGTCTGCTTTAAAATAATCATGCACTCATTCTCAAACCTGATTTCTAATTGGTTTACTCCTCTGGGATGGCTGATTCTGAGTATATAGATTTGAGTACATTTGTTACCACAGTGATATattcacattttccatttaacaCACGGACTTTCTCAAGagtcaagtaaaaaaaaaactgatttgagAAGCATTATGCATTAGCTCAGTTTGTTATGTCCCAAAACAGGCTTAAATTAAACCTGGCACAGTCTGTTATGCAGTTTTTAGAGGATGGGGTTGTAAACGAAAATTTTTAGCTACAGGATATGCATACTAAGCTAGCCAGGTGGGTGGGGTCAGGAATGTAAAATGACATGGGGTTGTTTTATGACATGGGGTTGTTTTATATTGTCAGGTATCATTCTTCACAAAAGTAATTCTCCCAAGTATTCAacatatgttttaatatttaaaattaaacctTTAGGGATATTTTACAATCATACATtcatatggccaaaggtttgtggacacctcaccatcacaacatgtgctttttgaacatcctaacCTCCACTTTtttggaaaggctttccaccagattttggaGCAAGGTTGTGggaatttctgcccattcagccacaagagcattaatgaggtcaggcactgatatagGGTGAGAAAGCCTGTTTGTGCAGTTTGAATTCCAGCTCATCCCAAATGTGCTCAGTGGCATTggggtcagagctctgtgcaggccattcaagttcttccacaccaaccttggcaaaccatgtttttatggaccttgctttgtgcacaggggcattatcatgctggaacttGTTTGAGccgcttagttccagtgaagggaaagcttaattctacagcatacaaacacatcctatacaattgtttgcttctaactttgtggcaacaatttggggaaggtcaaaaacttttggccatatagtgtacatacatacagaagCTTCTCAGAATGTACTGTATctgatgtgtgtgagattttcATAAGACGCTGTTTCTTAGGCTTCCTAAGACAAGGATGAGAAATGAggataaaaacagcaaaaccaGAAGTCGTTGTGCAGAAGCAACATGAAATGTTCAGCTCATGTCAAAACAATCTCGAAATTGATGTCCATTGatgttttatctccacacggtgactgtgagtgtacctaaccactttccttctctttctgccgagctacactcctgagctgccggtgatccagaccccccttcactctggacctgtccaccggcaatgcttcacactgccacgaagacgcttcagctgttttctacggactacacaaacacacattgtacactcacacacacgcactacagtgtaaacccatatgaggatgggttctctgttgagtctggttcctctcaaggtttcttcctatcaccatctcatggagtttttccttgccaccgtcgccctgcttgctcatcagagacttcacacacacacacacacttcactttacttttgtttgtgtaaagctgctttgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118234 True 2219 lncRNA 0.43 2 15055267 15058771

Neighbor

gene id symbol gene type direction distance location
necab2 necab2,LOC107672281,LOC106573751 coding upstream 86260 14885256 ~ 14969007 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding upstream 177788 14784940 ~ 14877479 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding upstream 345840 14695777 ~ 14709427 (+)
kmt5b kmt5b,LOC108264420 coding upstream 368789 14676544 ~ 14686478 (+)
arpin arpin coding upstream 398130 14653915 ~ 14657137 (+)
ranbp10 ranbp10,LOC107583731 coding downstream 72494 15131265 ~ 15170919 (+)
ripor1 fam65a coding downstream 156279 15215050 ~ 15291450 (+)
ctcf ctcf,LOC107583725 coding downstream 233153 15291924 ~ 15299579 (+)
cfdp1 cfdp1,LOC105419833 coding downstream 299632 15358403 ~ 15388947 (+)
bcar1 bcar1 coding downstream 336332 15395103 ~ 15467776 (+)
G99704 NA non-coding upstream 28181 15026487 ~ 15027086 (+)
G99518 NA non-coding upstream 325084 14729984 ~ 14730183 (+)
G99516 LOC108263939 non-coding upstream 329329 14725618 ~ 14725938 (+)
G99362 NA non-coding upstream 423906 14630335 ~ 14631361 (+)
G99276 ighmbp2 non-coding upstream 736613 14317597 ~ 14318654 (+)
G99766 NA non-coding downstream 112561 15171332 ~ 15173435 (+)
G99786 NA non-coding downstream 117465 15176236 ~ 15180771 (+)
G99813 NA non-coding downstream 156620 15215391 ~ 15215716 (+)
G99819 NA non-coding downstream 164878 15223649 ~ 15223854 (+)
G99879 NA non-coding downstream 392048 15450819 ~ 15455039 (+)
G99341 synm other upstream 530787 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1012815 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1098916 13932539 ~ 13956351 (+)
G98972 NA other upstream 1265877 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 1339501 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 241711 15300482 ~ 15346146 (+)
G100306 NA other downstream 1290686 16349457 ~ 16349787 (+)
G100345 NA other downstream 1541486 16600257 ~ 16601067 (+)
rgma NA other downstream 1598830 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2341655 17400426 ~ 17443468 (+)

Expression


Co-expression Network