G99780


Basic Information

Item Value
gene id G99780
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15149403 ~ 15150315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118323
CTCACTTCTGCAGCACTGTCTGCCACTCTCCGAGTCTCTCTCCGATGGGGAAACGAGCGATCATGTTGTGGATCTTTGCCCTCCACTCGCTCATATAGTCCTCGATGTCGAACACAAAAGGATGCTGGCCAAAGTTAGCGTCTACAATCTCTCCAGGAGTCTGTAGCCCTACTGTAGGATACAGGTTGGgctggagaaaaagaaaaaaaaatgagaaaatagcAGTTacaccaagagagagagagagagagagataagaggtgtcatagagatagacagagatataGAAGAGCCATTGAGTGATAGAGGTATTGTTTCCATTTTTGTGATCGCATGTTTTCACACTAGTTGCTGAGTCACTACACGTGAATTACTAACTAATTACTTTGTTACTCATGTGCTCCTAGCAGCGAACGCAGCCAAGCACATTACCACCCTTTATACTTGGACAACAAAGCATTCCGAAGGTATGGCAGTGAAAACAAGCTGTCTCGATATGTGGGCCTGTGAGGCTGATCAATGTTTCACTTACTGGGAGGTCTGTGAAGGCCACAcctggaaggaaagaaaagacagatgAACATCCACTCAGgccaaacaaaagaaaaaaaaagaaaaaaaaaaaaaaaggttttcaagTTCAGCAGGTTTCAAGTCAAAAGGCCATGACTATATGCTTAGTCAGCACGTGTGTGTTCTGACAGGACAGGTAGCATTTTTGTTGTTACCCAAGCTGTGTCCGTTCTTAGTGTAAAAGCACGTGTTGTTGATGAGGTTCACgcagcagccaatcacatcACCCGTCGTGAAGGTGGGCCCATATGGTTGGCCGGTCCCTGAGGAGCAAAAGGAGTGCCCATCATCACCGTGGTAACCGTAGGAGTGTTTGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118323 True 893 lncRNA 0.45 2 15149403 15150315

Neighbor

gene id symbol gene type direction distance location
tsnaxip1 tsnaxip1 coding downstream 17197 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 29685 15105315 ~ 15119718 (-)
edc4 edc4,LOC107733561,LOC107726309 coding downstream 44293 15075874 ~ 15105110 (-)
nrn1la nrn1l coding downstream 76908 15043298 ~ 15072495 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding downstream 122535 15018958 ~ 15026868 (-)
pard6a pard6a,LOC107692936 coding upstream 26896 15177211 ~ 15200248 (-)
LOC113534617 LOC108264368 coding upstream 321314 15471629 ~ 15473015 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 335698 15486013 ~ 15499252 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 924632 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1431047 16581362 ~ 16610310 (-)
G99493 NA non-coding downstream 500410 14648078 ~ 14648993 (-)
G99396 NA non-coding downstream 518658 14279443 ~ 14630745 (-)
G99482 NA non-coding downstream 545931 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 613393 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 629619 14510924 ~ 14519784 (-)
G99775 NA non-coding upstream 9888 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 20996 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 25860 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 147290 15297605 ~ 15299578 (-)
G99941 NA non-coding upstream 167194 15317509 ~ 15317867 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 802395 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1586829 13550680 ~ 13562574 (-)
G98770 NA other downstream 2097092 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2725425 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2744122 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 196851 15347166 ~ 15357563 (-)
G101178 NA other upstream 3037132 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4829754 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5245551 20395866 ~ 20416574 (-)
G102566 NA other upstream 5803287 20953602 ~ 20966910 (-)

Expression


Co-expression Network