G99801


Basic Information

Item Value
gene id G99801
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15176175 ~ 15180912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118350
CCTATTTGTATGTCCACATTCAGACTCAGACTCCCCGTTGTCCCTGCTACAATCGATGCATCACCCTGGGTATATATTGATCAATATGTGTCCCTTGTGTGGGGACATATGTTGCTTCTCATTAAAGCAAGGGTCACGAAGGTCAGACTGTGACTCAGTCGGTCTACCCATTACTTTAACCCATACTTACCAGATTACATGTGAAGAGCACCGTGCTAATGAATTAGATATGTAATAACCTAGGCCCCTCCATGGTTTGTGGTCTGACAGCTTGATTAATCTAAATACCCATGTGAGGTTTAGAAGGACCCAGTCTTTGTCCAGTGTGGAATATGATTATGCTGATTAGTTGAAAATAGTGCTGAGCTGTTTCAAAGACTCATTTGTTGGATTAAGGTTCCTATAGAGCTGTGCACATGACTGAAAAAAGTCTTTGtgcacatataaatatattcatagaGACAAATAGGAtaccgacAATGAAGGAGAATGGAGGAGGAACTCAACAAAATGGAGCTGGAACAAAACTGTTGACTTTTCACCaactttctgtgtttttaaagttatttttcgAAACAGTAGAAGAAACGTGGCCAGCAAAAACACATAGTATGCCAAAATGTTTAGAAACCTGTGGATAGGTGTGTTCCTGGCAGGTGTAGTTTCATCACTGGAGCCTTCTTTATTTCCACCTCATCATATTTATTTCCACTCTAtcatattatagtatatttaaGCAGGTCTTCAAGCTGAGAAAGGCTGTAGAACTGGGCTTGTTTTGACATACCCAGACACAACGTCTGCAAATCTAACACCTCTGACTCACTGGGACAGCTGGAGTGAACATGAAATAAAAGATGGACACAATCGTAGGCAAAGGGCATTTAAAAGGGATTGGACAGCTGGAAGggtatttttgggaggtggagaTTTGTCATCCTAGTGTGATTAGGTTACTTAAGAGGATATATTTTTAGGAGGAATTGTCCAAATGCACTGGTTATTATTTCTGAAGGGCAGTATGAAAAGATATTCAcgtatttctctctgtctctctctctctctctctggctaaTCAGTATCTAAAGATATGAATGGCACACAAATTGGAATAACAGCCACCGTAAGAAAAAGTACCATGAAcctaatttttttatgtatgtaaatgtatgtgtatatatacaatgAGAAAATGGACAATTTTGTAAACTGGGAGTCCTTTTTATTAAAAGagcagtatatatacagtatatgtgtaaaatatggaaagtatttttcttattcttgtACTTTTGTATGTATATTGGAATCCAGGAGAAGACGTTTCTATTTCTTTTGCGTGTGAGGAAGCAAACGGAAAGCTGAAGAAATCTATGATTTTATAATCAGATGGGTGGAGGTGTATCATACTGTGAATGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118350 True 1422 lncRNA 0.38 2 15176175 15180912

Neighbor

gene id symbol gene type direction distance location
tsnaxip1 tsnaxip1 coding downstream 43969 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 56457 15105315 ~ 15119718 (-)
edc4 edc4,LOC107733561,LOC107726309 coding downstream 71065 15075874 ~ 15105110 (-)
nrn1la nrn1l coding downstream 103680 15043298 ~ 15072495 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding downstream 149307 15018958 ~ 15026868 (-)
LOC113534617 LOC108264368 coding upstream 290717 15471629 ~ 15473015 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 305101 15486013 ~ 15499252 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 894035 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1400450 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 1500010 16680922 ~ 16741071 (-)
G99784 NA non-coding downstream 2741 15171311 ~ 15173434 (-)
G99775 NA non-coding downstream 7749 15160203 ~ 15168426 (-)
G99780 NA non-coding downstream 25860 15149403 ~ 15150315 (-)
G99493 NA non-coding downstream 527182 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 572703 14601223 ~ 14603472 (-)
G99915 ctcf non-coding upstream 116693 15297605 ~ 15299578 (-)
G99941 NA non-coding upstream 136597 15317509 ~ 15317867 (-)
LOC113534479 NA non-coding upstream 252483 15433395 ~ 15436916 (-)
G100023 NA non-coding upstream 296589 15477501 ~ 15478166 (-)
G100027 NA non-coding upstream 301917 15482829 ~ 15483037 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 829167 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1613601 13550680 ~ 13562574 (-)
G98770 NA other downstream 2123864 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2752197 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2770894 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 166254 15347166 ~ 15357563 (-)
G101178 NA other upstream 3006535 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4799157 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5214954 20395866 ~ 20416574 (-)
G102566 NA other upstream 5772690 20953602 ~ 20966910 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013416 pard6a coding NC_007129.7 CM002902.2 22028674 ~ 22094102 (-)