G99813


Basic Information

Item Value
gene id G99813
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15215391 ~ 15215716 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118362
GTCAGAAGCGCTTGAGGTGGGGGTGTGGTGGCCTAGTGGTTAGCTCACCTGCCCCACACCCCAAGGGTCAAGGGTTCGATTCCCatctccaccctgtgtgtgtgtttgtacttgTTGACATTCATTGTAGGTATCTCCAGATTGTACCCTGGATGCCCTGTGCCCCaagggatagactccaggctattattattattattattattatgctccCTGCGACCATGCGTAGGATAAGCGGTAGGGTAAGCAGGAGGATGGAATAGCCTGAGTGCTGCCAGCAGTGCTCCTGCCCGAGCTGGGAGGATCCTGAGCCAGGCTGGGATCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118362 True 326 lncRNA 0.53 1 15215391 15215716

Neighbor

gene id symbol gene type direction distance location
ranbp10 ranbp10,LOC107583731 coding upstream 44472 15131265 ~ 15170919 (+)
necab2 necab2,LOC107672281,LOC106573751 coding upstream 246384 14885256 ~ 14969007 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding upstream 337912 14784940 ~ 14877479 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding upstream 505964 14695777 ~ 14709427 (+)
kmt5b kmt5b,LOC108264420 coding upstream 528913 14676544 ~ 14686478 (+)
ctcf ctcf,LOC107583725 coding downstream 76208 15291924 ~ 15299579 (+)
cfdp1 cfdp1,LOC105419833 coding downstream 142687 15358403 ~ 15388947 (+)
bcar1 bcar1 coding downstream 179387 15395103 ~ 15467776 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding downstream 261750 15477466 ~ 15482137 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding downstream 307075 15522791 ~ 15601904 (+)
G99786 NA non-coding upstream 34620 15176236 ~ 15180771 (+)
G99766 NA non-coding upstream 41956 15171332 ~ 15173435 (+)
G99705 NA non-coding upstream 156620 15055267 ~ 15058771 (+)
G99704 NA non-coding upstream 188305 15026487 ~ 15027086 (+)
G99518 NA non-coding upstream 485208 14729984 ~ 14730183 (+)
G99819 NA non-coding downstream 7933 15223649 ~ 15223854 (+)
G99879 NA non-coding downstream 235103 15450819 ~ 15455039 (+)
G99854 NA non-coding downstream 252222 15467938 ~ 15468216 (+)
G99893 NA non-coding downstream 306304 15522020 ~ 15522724 (+)
LOC117597598 NA non-coding downstream 392254 15607970 ~ 15609103 (+)
G99341 synm other upstream 690911 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1172939 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1259040 13932539 ~ 13956351 (+)
G98972 NA other upstream 1426001 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 1499625 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 84766 15300482 ~ 15346146 (+)
G100306 NA other downstream 1133741 16349457 ~ 16349787 (+)
G100345 NA other downstream 1384541 16600257 ~ 16601067 (+)
rgma NA other downstream 1441885 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2184710 17400426 ~ 17443468 (+)

Expression


Co-expression Network