G99819


Basic Information

Item Value
gene id G99819
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15223649 ~ 15223854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118368
TTTATCTTTCTCCACAtgctcccacacacacagaatggatATGACTAAAGGGGGGTCAGGATGAAGCCTAAAGAAACAATGTGCATGATCTCATCACAGGCCTGTGCTAGTTCCAAGCTCGTGCATCTCCAAAGCAAGCTTTTCTCTTGCACTCTCTCACACGCTTTCTTCATTCTCTTCACTCCTGCACTCCTGCTACCCCGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118368 True 206 lncRNA 0.48 1 15223649 15223854

Neighbor

gene id symbol gene type direction distance location
ranbp10 ranbp10,LOC107583731 coding upstream 52730 15131265 ~ 15170919 (+)
necab2 necab2,LOC107672281,LOC106573751 coding upstream 254642 14885256 ~ 14969007 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding upstream 346170 14784940 ~ 14877479 (+)
chka chka,LOC108424340,LOC107738676,LOC107726368 coding upstream 514222 14695777 ~ 14709427 (+)
kmt5b kmt5b,LOC108264420 coding upstream 537171 14676544 ~ 14686478 (+)
ctcf ctcf,LOC107583725 coding downstream 68070 15291924 ~ 15299579 (+)
cfdp1 cfdp1,LOC105419833 coding downstream 134549 15358403 ~ 15388947 (+)
bcar1 bcar1 coding downstream 171249 15395103 ~ 15467776 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding downstream 253612 15477466 ~ 15482137 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding downstream 298937 15522791 ~ 15601904 (+)
G99813 NA non-coding upstream 7933 15215391 ~ 15215716 (+)
G99786 NA non-coding upstream 42878 15176236 ~ 15180771 (+)
G99766 NA non-coding upstream 50214 15171332 ~ 15173435 (+)
G99705 NA non-coding upstream 164878 15055267 ~ 15058771 (+)
G99704 NA non-coding upstream 196563 15026487 ~ 15027086 (+)
G99879 NA non-coding downstream 226965 15450819 ~ 15455039 (+)
G99854 NA non-coding downstream 244084 15467938 ~ 15468216 (+)
G99893 NA non-coding downstream 298166 15522020 ~ 15522724 (+)
LOC117597598 NA non-coding downstream 384116 15607970 ~ 15609103 (+)
G100079 NA non-coding downstream 447475 15671329 ~ 15734348 (+)
G99341 synm other upstream 699169 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1181197 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1267298 13932539 ~ 13956351 (+)
G98972 NA other upstream 1434259 13785095 ~ 13789390 (+)
G98946 megf11 other upstream 1507883 13691607 ~ 13715766 (+)
carmil2 carmil2,rltpr other downstream 76628 15300482 ~ 15346146 (+)
G100306 NA other downstream 1125603 16349457 ~ 16349787 (+)
G100345 NA other downstream 1376403 16600257 ~ 16601067 (+)
rgma NA other downstream 1433747 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2176572 17400426 ~ 17443468 (+)

Expression


Co-expression Network