G99879


Basic Information

Item Value
gene id G99879
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15450819 ~ 15455039 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118435
taatatatttcaaatccatatttGAAAGATCGTCTTGTCGTACCGTTTCAGATATATGGGTCTCTCCCCATTCAAGTAGATAGGAGCCTCGTACTGTACTACTGAAAATAACTGTGCGGGACTGATGCCAAGATGGCTGCTGATTGGCCAGGGTTAGGAGGACTCTGGTTTGAGTCAGCATTTTCATTCGGGAAATgaagtatgtactgtatgtgccaCAATATCTttacataaaacaacatataaaataaataacttctaCTTACAAAGATGCATGTAGGATTGAGTTAAAGTGTGAGATACaaataatatgtaattaatACAAAACGTGTCTGCCAGCAATAACACCAAAAGTGTGCTAGCTGAAAGAGTTCAGGTTGCTCTTTTGGAGTGTAGGTGACTGTGATTGCCCATTTACTCTTCTCTGCCTGCTGGTATGTCAATTCACCAGAGTCTCCATCTGTGAAccctacactcacacacacatacacacacacacacccccaacaCTCCTGCGCCACTCCCTGCAGGAAAGAGTTAAGAGGTCAGTGAATGTCTGTCATTGTCTATGAAGACACCGCTCTGCTTCTTTGTCTAGCGGGATGTCCTCCTTTACCTGCTGTGGACTCATTTTCTGCTCTGCTAGCTTGACacggaagaagaaaaaaggaaagagtaGGGAGTTACAGGGAAAGAGGACACCAGGCCCAAAGCTGTTGTGGTGAGCACGGCAGGTGGAAGAtgaagagagggaggaaggcTCTGGTTTCCCATGCGGAGCCAAGGCCTGTGGCCTTTCATTAGCTGCCCACAAAGGCAGTATGGGTTTGGGACAGAGCCGGAGGGAGGATGAGCCCAGCGCTGCCCCTTAGTATAAACACGAGGGCTCTTGCAGCCTCTTTATTTGTGCTCCAGTGGCTCTCATCAAAGGCCTGAGATATTAGAACAGGGCACAGGGCTGGCTTTGTACTGTACAGATTTGAAAAAGTGCATGGCAGAGTGTAGGCATGGGGAGCctggtgtaacacacacacacacacacacacacacacacacacacacattcatccgTTGTTGATGAGTGTGCATTTTAGCTATGTGTGTGCACGTATCACGTGTGTTCTCTGTAGTAAACAAACTTTCAAGCTCTAATTGGTTCATGTTAGGCAGCTGCTGCAGGGCTAAACTCCATGTTCACCTCTTTAGTGATCATTATGATGTTTTactgtcctctcctctcctgaAGGGCACACATGAAAGGAGACTAGATCTGCTCTTAGTATTCTAATGGAAACCAAATGTGTGTCCACTTCATCTAATCGCTATCTAGaatcaaataaaacacaattcatAAAGATAATATCCTGTTTCTAGTGTCGGAAATCCAGAAATCTTTaatgatggagtgtgtgtttctgccaataatatacttCCCACACAAGCACATTCTCTCACATGCTGGTCTCAGTCTCTGGCTAACCTTTGATCACAGGCAACAGGTCTGATGTGGTCTCCAAGGACACACACTTATCCCGCTCTTATTAATGGGTGTTGGAAATGAGCTTGACTGTTGCGTTGCCAAAAGCAAagtgagagtttgtgtgtgtgtgtttgtgtgtgcgtgcatgtgtgtgtagtctcaCACGTATTTATTCAGACAGTTTCACGCTCCTATTTCCAGAATATGAATAAAAACCGGGAGTAAAGAGAGATAAAGGGCAAAAGTGAAGTGTTGTTGTTAAGCATAAGTAGCATTCAAGCATGCAGGAGATAAATTGGTTTGGGGAGACAGAGAGGGTTAGAAATGCAGAGAGTAAATGAGGATGCACCTCAGGGAGACCAGGGAAAAGGCAAAAGAATTCAGAGAGCTAGAATATTAGAACTGAGGCCAGGTCTTATAGAGAAAGAGCAAGAAGTGGCCTGAACAGGAAGCAACAGAACTTGGGGTTCTCGTTCATTCCAGGCAAATTTAGCAGATGAATGTAACGGTCACATTGATGGTGGTAAAAGTGAATGCATTGTCACTGTCATTACAGCTTTCTGTAATCAAGTGTTTGGTTGATCAGCTAATATTGGCTGCAACCAAAtgatgtaggttttttttttattttgtcagtcaaaacaagataaaaatcTATACCATGATGAACCTACAGTGACTGTAATCCACTGTTgacaaaacaataaacataatGTAAGTATAATATCAACACTCTTAAGGTGTAGTAAAGTCACAGCCTTTATGATTGCGAATGAACATGTTTCTATAGCTTTTGTGTCTTAAAAATCTTTGGGCTGGTACAGTTTTtgagaaattaaacatttgtgcaggtttaggaataaaacagctgacatacatatataaaattgcaaATACTCTTGTCAATTATACAATTTGAAATTCTGCATTAGTAAGTCTTCGTATGTGCAAAATGTACACAAGCTGAAACTGAATCTTCATGAATTTCTTTCataaatgctcctgtgaacgATTTATGAACAAATTTGTTAAATCTTGTTAAACAAAGCTCGGCGCTGGTTAGTACCATTACTTCTTGTTGGTCCCAACCTTTGGTAGGGGACTCACAGAGAAATGGAGAAGCATGGTCCTAGTTCCAGTGCAGTTGAAAAAGGTTGACTGTCTGCATGTGAGGAGCAGCATGCTATCCCACCCAGCACAGTCATGGCATTGATGTGGAGAACGTGTTTGGGGGTCTTAGGACTGTTAGCATGGCTCTGTGTGGATTAAGGATGgggtctctctgtctccatcagCCCTGTAGACCGTCTAAATCAGCACACATGGCACATGCCACGTGGCACTCGCAAACTGACACATGCGCTCATATACACAAGTGCGGAATTAATTAGCCACTTATTAATCCAGCATTGGGTGTAGGGCAGGAGAGGAAGACTATAcatttctcactctgtctcctTTACTACTGCTGTTGCTTCTGATCTCGCTCATACAGCAGCTGCATGTTCTACAGCCTCTTTAAATTAGGCTTTAACCATTCTTCAGGCTGAGGGGGGATTGCAATCTCTCATGTCAACTCCAGACTAGCAGTGCCCACATTAAACCAGCcatgaaaatggagaaagatTGACTTCAATCAAGCTGCCATAAAAAAGTAACTTCAGTGAAGTTGCAATAAAAACCTTGAACCCAAGAGCGAAAATCAAAGTGTTTTGGATTGGGCACTTTGAAAGCACAGCTGCTTGGATGCCCTAGAAAGGCTACTATATGTaggagtgtgtatatgtgtgtgtagctgagGAGGCAGCTGCTTTGGCACTCACATGACATCCTGTCACACAACCCAGCTGAGAACTCTCTGGATTATTTGCATTTATAGCCCGTTCtgcccagacacacacaaacacatacacacacgcacacacaaataaaaaatgaatgaggaATGTATTGGCACATAGCTCTCTGTAAAGTTGTTCTGTGTGAACCTCAGATTTGTTTTGGTTGAAGTTACCTAGTGGGCTAAAATTTGAACAAGTATAGCCTTTCCTTGAGTGGCCTCTCCAAAGCCACGCCCTCCAACACATGCCCGAATACTAGTGCAAGATGGGACATATCTGAATTAACAGTGAATATGCCTACTTGTATTGACTGGCTGGGTGTGGGTGGTCCACATCATTTATTTCTTGTCCTATTTACATAGGATGAGGTTTCACAGAGACTAGAGTTTTTCCAATGGCAGAAATTATATTGACATTTGAAGAGAACTgcaccaaatattacaaaagtcTTCTGACTTAAAAACCCTTGACCCCACCTTTAATGGCTGCGATTTCATAAAATACATGACATAGACACACTAGTTGTGGTGTAATGATACAtggcatatacagtacatgtgcaTTACACACCATTACATGGCAAGCACCAAGTGCAGAGATTCCCAGGATGCATTTCTGAGACTGTACAAATGAAGTAAGCCTTCCTCCTGTGGTAGAAATGATTTGGCTTTATCCTGCCCTCATCCCCATTCTTAGAATAAACAGATGCAGACACAAGTGCTGTGGACAGTGGAGGTAGTAAAACATTTCATCTCTGACTGAACAATGGCAACGTGAACgccacccagacacacacacacacacacacacacacacagacaaggaGACCCCCTACCTGCACTCGGTGACctaaaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118435 True 4179 lncRNA 0.43 3 15450819 15455039

Neighbor

gene id symbol gene type direction distance location
cfdp1 cfdp1,LOC105419833 coding upstream 61872 15358403 ~ 15388947 (+)
ctcf ctcf,LOC107583725 coding upstream 151240 15291924 ~ 15299579 (+)
ripor1 fam65a coding upstream 159369 15215050 ~ 15291450 (+)
ranbp10 ranbp10,LOC107583731 coding upstream 279900 15131265 ~ 15170919 (+)
necab2 necab2,LOC107672281,LOC106573751 coding upstream 481812 14885256 ~ 14969007 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding downstream 22427 15477466 ~ 15482137 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding downstream 67752 15522791 ~ 15601904 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding downstream 158241 15613280 ~ 15653287 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding downstream 205953 15660992 ~ 15672334 (+)
mef2aa mef2a coding downstream 268384 15723423 ~ 15809116 (+)
G99819 NA non-coding upstream 226965 15223649 ~ 15223854 (+)
G99813 NA non-coding upstream 235103 15215391 ~ 15215716 (+)
G99786 NA non-coding upstream 270048 15176236 ~ 15180771 (+)
G99766 NA non-coding upstream 277384 15171332 ~ 15173435 (+)
G99705 NA non-coding upstream 392048 15055267 ~ 15058771 (+)
G99854 NA non-coding downstream 12899 15467938 ~ 15468216 (+)
G99893 NA non-coding downstream 66981 15522020 ~ 15522724 (+)
LOC117597598 NA non-coding downstream 152931 15607970 ~ 15609103 (+)
G100079 NA non-coding downstream 216290 15671329 ~ 15734348 (+)
G100097 NA non-coding downstream 404220 15859259 ~ 15859474 (+)
carmil2 carmil2,rltpr other upstream 104673 15300482 ~ 15346146 (+)
G99341 synm other upstream 926339 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1408367 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1494468 13932539 ~ 13956351 (+)
G98972 NA other upstream 1661429 13785095 ~ 13789390 (+)
G100306 NA other downstream 894418 16349457 ~ 16349787 (+)
G100345 NA other downstream 1145218 16600257 ~ 16601067 (+)
rgma NA other downstream 1202562 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1945387 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 2034507 17489546 ~ 17493092 (+)

Expression


Co-expression Network