G99915 (ctcf)


Basic Information

Item Value
gene id G99915
gene name ctcf
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15297605 ~ 15299578 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118481
AGgacaatattattttattagctgTACAGCAATACATTCTCCACGTTTTTCCTATTCCCTCAAAGCCCCACCCAGCCATaataaatgtctttatatgTTGGTTTTCTGACCACTGTAAAATTCACACAGTTACTGCTAggtacaaaaaaggaaaaagcatCAACCTAAAATTAAGAgcttaacaaaagaaaagaaatgtaaatgaaaaagtaCAAGTAGGGAAAACATTCTGAatctggaaattaaaaaaaaagttcagaaaatAACAGTCCTTCTAAATGTGAACTTTCTTATGAACTAACTCTATGCAAATAGTTCTTCCATAACAGAATGAATCAAAATGGCTTCATTAAGCTAAAGCTGTGTGGACTGTATGTGATCTGAACAAAAATGTGAGAAAGCTGCTATGGACAGAGACCTTTTTCTGATCTGTTATCATGTCAGCAGTCATACCCAATCGGAGAGTTAGGGCGTAGCCTGCACTAAGTTACAGGACTCAGTGCTCATCTAGCATTGGCCGACTTTCAATTTTCCCCACCTgtcctttttccttcctttacAGCGTCAGGATCTAAACCCTGGTCGCCCAGTTACATGTTACCACTACACCACTCAAGAGTTATGCTCACCTTTATAAGTCTCGAAACCAACATAGAAATGGGCTCTGACAGAAACAAGCTATAGGCTCTTATCTTCCTATCTTAAGCAATCATAAAGGAGAATATCTAATTCCCTCCCTGAAAAGCTGAAAACAAACCCAGGTGACATTAGAAGCTGTACAAGACCAAGGAAAAACAGATTGGGGCATTTACATGATATTATGCCATTACGCCCTTGTCAAGATTTAAAATTCTTAAGGAGCATGTTTTCAAATGACTactgtttaaaatgtcattgtGTCAGCATTCAATGTCATCAATTCACTTGAAAAggattaaaatgttcataataaaacaaaaataaaaaaacgtaTTTACACGCAAGACCTGCCAAGATTACTCTTCTTTTGTACAATGTTATCAACTTCAGATTTTTAGTTATTTCAAACGTGATGGATGGAAATCCTCCCAGACCATACAATTATATCTATATTCCTaagcttttctctctttcatcaaCTGTAATCAGTGAAAGCAATAAGAAATGCAACAGAGAATAAAAGTTGCCACATGTGTCAGATATTAAAAGTATATTTGTTGGGTAAAATGCCCATTCTACAACAGTGATAGAAAGTCTAAATATCAAGGCTTGACCAGGCCCACCAATTTTTACTTTTCAAATATTGCCATGGTAATGTAATAGATTGGAGGCTGAAAGAATATCGGCATGTTAATTAGGCAAAAACATCTAAAGGTGCGCAGTTCACTACAGTAAATATGAGGAACCAGCTACAGTCACCGGATTTGCACATAAGCATCTCTGCAACCCGTGCCACACACTAGATGGTATACATGGGACAATAATCAGACTAAtaactgaaaatgtaaaaaagcatCATGCACAGTTGACATCATGAGTCTAAAgcatgtaacaaaaaaaaaaaaaaaactaacaaaaaacaaaaaaacacaaattaaagtgAAGATTAAGAGTGAAAAAGGACCATTGGATATTTCATTCCACAGATCAGAAACTGAAGGAGAACACAGCAGAAAGGAGTTTGGCTGTGTTCTGTGAGGCAGGGAGAGCACATCACCGGTCCATCATACTGAGGATCATCTCAGGGGTGAGGTCTCCATTGGGTGCGGCCTCAGGGACAGAGAGCTGCTCTGCCTCCACTCCTCCCTCTGCTGCTTCAATCTCCTCCACCACAGGCTCTGCTGATGCTGACGCTGAAGAATCCACGCCGTCCTGCTCCTTCTTCACTATGATGTTCTCAATGGCTCCTGTGCCCTCATCCTCCACCTGGATAATGGCAGTTG

Function

symbol description
ctcf Enables chromatin binding activity. Acts upstream of or within regulation of transcription by RNA polymerase II and skeletal muscle tissue development. Is expressed in brain; digestive system; immature eye; notochord; and somite. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 21. Orthologous to human CTCF (CCCTC-binding factor).

NR:

description
PREDICTED: transcriptional repressor CTCF isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118481 True 1922 lncRNA 0.39 2 15297605 15299578

Neighbor

gene id symbol gene type direction distance location
pard6a pard6a,LOC107692936 coding downstream 97357 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 165399 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 177887 15105315 ~ 15119718 (-)
edc4 edc4,LOC107733561,LOC107726309 coding downstream 192495 15075874 ~ 15105110 (-)
nrn1la nrn1l coding downstream 225110 15043298 ~ 15072495 (-)
LOC113534617 LOC108264368 coding upstream 172051 15471629 ~ 15473015 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 186435 15486013 ~ 15499252 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 775369 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1281784 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 1381344 16680922 ~ 16741071 (-)
G99801 NA non-coding downstream 116693 15176175 ~ 15180912 (-)
G99784 NA non-coding downstream 124171 15171311 ~ 15173434 (-)
G99775 NA non-coding downstream 129179 15160203 ~ 15168426 (-)
G99780 NA non-coding downstream 147290 15149403 ~ 15150315 (-)
G99493 NA non-coding downstream 648612 14648078 ~ 14648993 (-)
G99941 NA non-coding upstream 17931 15317509 ~ 15317867 (-)
LOC113534479 NA non-coding upstream 133817 15433395 ~ 15436916 (-)
G100023 NA non-coding upstream 177923 15477501 ~ 15478166 (-)
G100027 NA non-coding upstream 183251 15482829 ~ 15483037 (-)
G100028 NA non-coding upstream 184425 15484003 ~ 15484301 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 950597 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1735031 13550680 ~ 13562574 (-)
G98770 NA other downstream 2245294 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2873627 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2892324 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 47588 15347166 ~ 15357563 (-)
G101178 NA other upstream 2887869 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4680491 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5096288 20395866 ~ 20416574 (-)
G102566 NA other upstream 5654024 20953602 ~ 20966910 (-)

Expression


Co-expression Network