G100097


Basic Information

Item Value
gene id G100097
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15859259 ~ 15859474 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118682
CAGCAGCGTTTTAATGTGtttgcgtatgtgtgtgtgtgtgtgtgagagagggcagacaggtgtgtatgtgcagcCCTGTGAGGGCGAGAGTTCTCTGTGTTACAGGTGCAGGCCTGACAGGCTTGGCTTCAGGATCAGAAAGGCCAGGATAAGATGAAAGGAGGGAGTGGAGACCGACTGACCGTTTCGGGAGCAATGTCATGACTTCCAAATGGC

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU118682 True 216 lncRNA 0.53 1 15859259 15859474

Neighbor

gene id symbol gene type direction distance location
mctp2a LOC108264697 coding upstream 3147 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 50143 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 186925 15660992 ~ 15672334 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding upstream 205972 15613280 ~ 15653287 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding upstream 257355 15522791 ~ 15601904 (+)
LOC113534692 NA coding downstream 399971 16259445 ~ 16260173 (+)
LOC113534621 NA coding downstream 641286 16500760 ~ 16510979 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 905221 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 979401 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 1119461 16978935 ~ 16983976 (+)
G100079 NA non-coding upstream 124911 15671329 ~ 15734348 (+)
LOC117597598 NA non-coding upstream 250156 15607970 ~ 15609103 (+)
G99893 NA non-coding upstream 336535 15522020 ~ 15522724 (+)
G99854 NA non-coding upstream 391043 15467938 ~ 15468216 (+)
G99879 NA non-coding upstream 404220 15450819 ~ 15455039 (+)
G100102 NA non-coding downstream 3817 15863291 ~ 15863493 (+)
G100103 NA non-coding downstream 4216 15863690 ~ 15863915 (+)
G100160 NA non-coding downstream 9073 15868547 ~ 15868764 (+)
G100161 NA non-coding downstream 10482 15869956 ~ 15870159 (+)
G100183 NA non-coding downstream 106906 15966380 ~ 15966587 (+)
carmil2 carmil2,rltpr other upstream 513113 15300482 ~ 15346146 (+)
G99341 synm other upstream 1334779 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1816807 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1902908 13932539 ~ 13956351 (+)
G98972 NA other upstream 2069869 13785095 ~ 13789390 (+)
G100306 NA other downstream 489983 16349457 ~ 16349787 (+)
G100345 NA other downstream 740783 16600257 ~ 16601067 (+)
rgma NA other downstream 798127 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1540952 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1630072 17489546 ~ 17493092 (+)

Expression


Co-expression Network