G100102


Basic Information

Item Value
gene id G100102
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15863291 ~ 15863493 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118687
CTTGGAAGCAATCACAACCTGTGCAAAATTTCTGCATGTGCAGTTTTAAAGTTTGAGTCCTGCTAAATCTCTTTCAGCCAAGTCACTACAAATTATGGCAAATTTGTACAATATGTAGGCCTGCTAGggaataaaaagtgtataaCAAAGTAATGACGCATACTTTAGGCAGAAGTACAATTCTGCTTACCCGTGTGGTTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118687 True 203 lncRNA 0.39 1 15863291 15863493

Neighbor

gene id symbol gene type direction distance location
mctp2a LOC108264697 coding upstream 7179 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 54175 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 190957 15660992 ~ 15672334 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding upstream 210004 15613280 ~ 15653287 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding upstream 261387 15522791 ~ 15601904 (+)
LOC113534692 NA coding downstream 395952 16259445 ~ 16260173 (+)
LOC113534621 NA coding downstream 637267 16500760 ~ 16510979 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 901202 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 975382 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 1115442 16978935 ~ 16983976 (+)
G100097 NA non-coding upstream 3817 15859259 ~ 15859474 (+)
G100079 NA non-coding upstream 128943 15671329 ~ 15734348 (+)
LOC117597598 NA non-coding upstream 254188 15607970 ~ 15609103 (+)
G99893 NA non-coding upstream 340567 15522020 ~ 15522724 (+)
G99854 NA non-coding upstream 395075 15467938 ~ 15468216 (+)
G100103 NA non-coding downstream 197 15863690 ~ 15863915 (+)
G100160 NA non-coding downstream 5054 15868547 ~ 15868764 (+)
G100161 NA non-coding downstream 6463 15869956 ~ 15870159 (+)
G100183 NA non-coding downstream 102887 15966380 ~ 15966587 (+)
LOC117597610 NA non-coding downstream 165322 16028815 ~ 16044957 (+)
carmil2 carmil2,rltpr other upstream 517145 15300482 ~ 15346146 (+)
G99341 synm other upstream 1338811 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1820839 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1906940 13932539 ~ 13956351 (+)
G98972 NA other upstream 2073901 13785095 ~ 13789390 (+)
G100306 NA other downstream 485964 16349457 ~ 16349787 (+)
G100345 NA other downstream 736764 16600257 ~ 16601067 (+)
rgma NA other downstream 794108 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1536933 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1626053 17489546 ~ 17493092 (+)

Expression


Co-expression Network