LOC113534481


Basic Information

Item Value
gene id LOC113534481
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16081882 ~ 16084946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118777
TCCGGCTGTTCGTCTCTCGCTAATGCCAAAAGCGACGTGCGCTCGTTTTTAATCTGATTAATGCTTTTGAGACTCGTTTCTAATTGAAGCGGACGTGGCAAAGCTACGGGTGTGCGTCCGCCTTTTTTACTCATGCATGCTGCAGAAGACGCGGAATGTTCTTTGCTTATTTTGCAgtcagatgtgtgtttttttttttttttttttaagtgagcTCTGCACTGTGCGAGCCAGAAGCCTTTACGCAAAGCGGACACGAAGGAAAAAcgcaggaaaaaaataacaatactaCGGTTTTGGAATTTACTGAAAGCCATTTTGCTAGTGTTAATATTAGTGAAGGGGTTTCCGGGCTCGGAGGAGCAGGGTGGCTCGTGCGCGGGTGGAGAAGACTTGACTTCTACCAGGTTGCACTCTCACACTAACGCAACGTGTAAAGTTTCCCTTCATCTTATCTTTTTGCTCCACCGACTACCTTCGACTGGGAGATAGAGGGATTGTGACCTGCAGGTCAGCGAAAGCCCGACCTAATTAACTCTGCACGGAGCGAAGGTTAACCAGGCTAATCTACATGAAGAGGCTGATTAGGTTAGATGACATGAAGTCGCAAAAAAGAAGAATTACAGCCTGTCCGCTGAAATGGTCTCTACACTCCCTGACCAAAATATTACCAGCATCCGCAGGTCTGACTGTTACTGGctttcatcacaccacttctTATTAGTTCTAACCTAAACGACAACGATAATTGTTATGGCACTTTAATCTATaagtttaaattaatattacataattattcaatctgtttaaataagcaacaaatttgttgtttttttttcctccctccaaTTTGTTTCTAATGTAAACACTGGTCTTTGCACCTCTATGATAACCTGTGCAACTATGTGAGGTGTTATAAGGGTCAGTGTCACAGTCTAATGGCCTAAAGACCTGTCACTATATCCAAGCAAAATATTGCAGGGAATATCCCATTTTAATGCAGGatagttatttaacaaatttagtAACACATCTGAAAGAATGCTTCAGCCGTGCTCAGGAAGCAGCCTTTACATTTCAAATGTGATGCAAGGAATAAGTCAAAACAATTGGCCAATTTTAACCAAGGTTCATACTATCTGAAATATAGtcataaatattttagaatatCTCACAAATCACTAAAGTATAGTTTTAGTAACAATTAAGAATGATCATGATAGTG
>XR_003403501.2
TGCATCTCCAGGGGCTGTCAGCCATGAGTCCAGTGCAAAATTTACAGCTCTAAATCAGAGCATATGCCGCCAATGAGGAAGAAACGCAGAAAACTGGGTGTATGACAGTATCTGGGTGCCCCCTAGCGTATGGATCATTTCTGCCTCAAAATACTCGCTTTACCGTGCAAGAGCCATCTTAAATAGAAAACGGCGTCTCCGGCTGTTCGTCTCTCGCTAATGCCAAAAGCGACGTGCGCTCGTTTTTAATCTGATTAATGCTTTTGAGACTCGTTTCTAATTGAAGCGGACGTGGCAAAGCTACGGGTGTGCGTCCGCCTTTTTTACTCATGCATGCTGCAGAAGACGCGGAATGTTCTTTGCTTATTTTGCAgtcagatgtgtgtttttttttttttttttttaagtgagcTCTGCACTGTGCGAGCCAGAAGCCTTTACGCAAAGCGGACACGAAGGAAAAAcgcaggaaaaaaataacaatactaCGGTTTTGGAATTTACTGAAAGCCATTTTGGATCCGATGCCTGTACAGGGCAGAGAGCAGATAGGCGAGCTGCAGAACTACACAGCGTTATAAACATGAAGAGCTTCTGAAACCTACCAAAAGCATAGGATGTCGATTCGTCGTCCCCGTAGTGCATCCTCTCCTAGAGAAAACCAACTTagtcttctgtctttctttgtgtttttacGGTGTGTTTGCTGGGGCAGACAGTGTTCCCTTCCCCACAGACGGAGTAATGCACGAGAAAAACAGGTTCCTCGGTTtattgaaatgattaaaaaaagctttagggaataaaagaagaagaagaagaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118777 True 1225 lncRNA 0.40 2 16082079 16084946
XR_003403501.2 False 824 lncRNA 0.45 2 16081882 16082989

Neighbor

gene id symbol gene type direction distance location
mctp2a LOC108264697 coding upstream 225770 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 272766 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 409548 15660992 ~ 15672334 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding upstream 428595 15613280 ~ 15653287 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding upstream 479978 15522791 ~ 15601904 (+)
LOC113534692 NA coding downstream 174499 16259445 ~ 16260173 (+)
LOC113534621 NA coding downstream 415814 16500760 ~ 16510979 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 679749 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 753929 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 893989 16978935 ~ 16983976 (+)
LOC117597610 NA non-coding upstream 36925 16028815 ~ 16044957 (+)
G100183 NA non-coding upstream 115295 15966380 ~ 15966587 (+)
G100161 NA non-coding upstream 211723 15869956 ~ 15870159 (+)
G100160 NA non-coding upstream 213118 15868547 ~ 15868764 (+)
G100103 NA non-coding upstream 217967 15863690 ~ 15863915 (+)
G100229 NA non-coding downstream 95094 16180040 ~ 16185319 (+)
G100285 NA non-coding downstream 112672 16197618 ~ 16197833 (+)
G100292 NA non-coding downstream 116915 16201861 ~ 16202070 (+)
G100296 NA non-coding downstream 123219 16208165 ~ 16208414 (+)
G100301 NA non-coding downstream 233327 16318273 ~ 16318723 (+)
carmil2 carmil2,rltpr other upstream 735736 15300482 ~ 15346146 (+)
G99341 synm other upstream 1557402 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2039430 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 2125531 13932539 ~ 13956351 (+)
G98972 NA other upstream 2292492 13785095 ~ 13789390 (+)
G100306 NA other downstream 264511 16349457 ~ 16349787 (+)
G100345 NA other downstream 515311 16600257 ~ 16601067 (+)
rgma NA other downstream 572655 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1315480 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1404600 17489546 ~ 17493092 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G159662 NA non-coding NC_035914.1 CM008317.1 20207227 ~ 20213526 (+)