G100229


Basic Information

Item Value
gene id G100229
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16180040 ~ 16185319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118823
agtaaAGTTACTGAACCATATGTGTGTGACTGCGTCTCTTTACATCCATAATACAATAACATGTTGGCGACGAGGATGGCTTTACTTGGAAGAATGCCACTTCCTTCAATTCCTTGCAAAGCCCAGGTATGCCCAGCATGCCTTTTGAAACATGGATTCACATGTTTGACAACTATGTAGTGGCGCTCACGGCAGATGACATGCTGGACAAAAGGAAATATGCCCTGCTAATTCACTCCGTCGGTACTGAAGTACAGCGGATTTTCTACACTCTACCAGTGGACACCGACACTTATACAGCTGTTCTAGAagcatttaaaaagttttttttttatgccaaaACTTAACGTTGTGGCAGAAAGGAACAAAGGTTTCATCAGCATGCACAGTGAACAGGTTGATCCGTCTGTGGATTCACTTCCTGACAAAGTTCATTCGGCTTCATCACTCACAGAGGTCTGGCCAAGTTGAAAGCTGCTGTTTCACATACcattaaaagtgaaaataaatttgcacagaaaaaaacccaaaaatataCCTGGGAAGCACACTGGGACATCCACTGGGAGAGGTGACCGTTTCTCTCATTACAATCTCAGATGAGATAAAAGTAGACCTCTTTTCAGCCAGATCGCGCTTGCCCATTGGACCCAGAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118823 True 659 lncRNA 0.43 2 16180040 16185319

Neighbor

gene id symbol gene type direction distance location
mctp2a LOC108264697 coding upstream 323928 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 370924 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 507706 15660992 ~ 15672334 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding upstream 526753 15613280 ~ 15653287 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding upstream 578136 15522791 ~ 15601904 (+)
LOC113534692 NA coding downstream 74126 16259445 ~ 16260173 (+)
LOC113534621 NA coding downstream 315441 16500760 ~ 16510979 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 579376 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 653556 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 793616 16978935 ~ 16983976 (+)
LOC113534481 NA non-coding upstream 95094 16081882 ~ 16084946 (+)
LOC117597610 NA non-coding upstream 135083 16028815 ~ 16044957 (+)
G100183 NA non-coding upstream 213453 15966380 ~ 15966587 (+)
G100161 NA non-coding upstream 309881 15869956 ~ 15870159 (+)
G100160 NA non-coding upstream 311276 15868547 ~ 15868764 (+)
G100285 NA non-coding downstream 12299 16197618 ~ 16197833 (+)
G100292 NA non-coding downstream 16542 16201861 ~ 16202070 (+)
G100296 NA non-coding downstream 22846 16208165 ~ 16208414 (+)
G100301 NA non-coding downstream 132954 16318273 ~ 16318723 (+)
G100340 NA non-coding downstream 398302 16583621 ~ 16583947 (+)
carmil2 carmil2,rltpr other upstream 833894 15300482 ~ 15346146 (+)
G99341 synm other upstream 1655560 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2137588 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 2223689 13932539 ~ 13956351 (+)
G98972 NA other upstream 2390650 13785095 ~ 13789390 (+)
G100306 NA other downstream 164138 16349457 ~ 16349787 (+)
G100345 NA other downstream 414938 16600257 ~ 16601067 (+)
rgma NA other downstream 472282 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1215107 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1304227 17489546 ~ 17493092 (+)

Expression


Co-expression Network