G100306


Basic Information

Item Value
gene id G100306
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16349457 ~ 16349787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118902
cttcattgttcccaagaaggggggagggctgcgtcccattttggacttgcggcaattgaacctctcagtcgctcgactgaagttcaggatgcttacggtcactcaggtcgtgtctcagatcaggtccgaggactggttcgtcacgatcgacctaaaagatgcgtatttccacatctccatccttcccccgcacaggaagttcctgaggttcgctttcgggggcgaagcttaccagtatcgggttcttcccttcggcctagcactctcaccccgcaccttcacgaagtgcgtggatgctgccctggctcctatgcgactacagggcatccgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118902 True 331 TUCP 0.56 1 16349457 16349787

Neighbor

gene id symbol gene type direction distance location
LOC113534692 NA coding upstream 89284 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 493345 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 540341 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 677123 15660992 ~ 15672334 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding upstream 696170 15613280 ~ 15653287 (+)
LOC113534621 NA coding downstream 150973 16500760 ~ 16510979 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 414908 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 489088 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 629148 16978935 ~ 16983976 (+)
blm blm coding downstream 691570 17041357 ~ 17065819 (+)
G100301 NA non-coding upstream 30734 16318273 ~ 16318723 (+)
G100296 NA non-coding upstream 141043 16208165 ~ 16208414 (+)
G100292 NA non-coding upstream 147387 16201861 ~ 16202070 (+)
G100285 NA non-coding upstream 151624 16197618 ~ 16197833 (+)
G100229 NA non-coding upstream 164138 16180040 ~ 16185319 (+)
G100340 NA non-coding downstream 233834 16583621 ~ 16583947 (+)
G100341 NA non-coding downstream 234557 16584344 ~ 16584820 (+)
G100355 NA non-coding downstream 319600 16669387 ~ 16670025 (+)
LOC117597522 NA non-coding downstream 401220 16751007 ~ 16755979 (+)
G100360 NA non-coding downstream 408352 16758139 ~ 16758343 (+)
carmil2 carmil2,rltpr other upstream 1003311 15300482 ~ 15346146 (+)
G99341 synm other upstream 1824977 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2307005 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 2393106 13932539 ~ 13956351 (+)
G98972 NA other upstream 2560067 13785095 ~ 13789390 (+)
G100345 NA other downstream 250470 16600257 ~ 16601067 (+)
rgma NA other downstream 307814 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1050639 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1139759 17489546 ~ 17493092 (+)
G101403 NA other downstream 2201659 18551446 ~ 18551724 (+)

Expression


Co-expression Network