G100309


Basic Information

Item Value
gene id G100309
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16356598 ~ 16356815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118905
gcttcatggaatgggtttccatggccgagcagctgcatccaagccacacatcaccaagtgcaatgcaaagcgtcggatgcagtggtgtaaagcacgccgccactggactctagagcagtggagacgcgttctctggagtgatgaatcacgcttttccatctggcaatctgatggatgagtctgggtttggaggttgccaggagaacggtacatttcgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118905 True 218 lncRNA 0.54 1 16356598 16356815

Neighbor

gene id symbol gene type direction distance location
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 272985 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 857346 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 883583 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 1156350 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 1224392 15121047 ~ 15132206 (-)
LOC113534689 NA coding upstream 224547 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 324107 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 582076 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 731826 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 1065546 17422361 ~ 17478285 (-)
G100307 NA non-coding downstream 6811 16349457 ~ 16349787 (-)
G100302 NA non-coding downstream 37862 16318289 ~ 16318736 (-)
G100298 NA non-coding downstream 123325 16233022 ~ 16233273 (-)
G100288 NA non-coding downstream 157900 16198494 ~ 16198698 (-)
LOC113534800 NA non-coding downstream 222429 16088944 ~ 16134169 (-)
G100315 NA non-coding upstream 27742 16384557 ~ 16384788 (-)
G100322 NA non-coding upstream 108015 16464830 ~ 16465042 (-)
G100323 NA non-coding upstream 112833 16469648 ~ 16470260 (-)
G100324 NA non-coding upstream 113542 16470357 ~ 16470614 (-)
G100386 NA non-coding upstream 226783 16583598 ~ 16584075 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 999035 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2009590 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 2794024 13550680 ~ 13562574 (-)
G98770 NA other downstream 3304287 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 3932620 12420437 ~ 12423978 (-)
G101178 NA other upstream 1830632 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3623254 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 4039051 20395866 ~ 20416574 (-)
G102566 NA other upstream 4596787 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4638526 20995341 ~ 21013100 (-)

Expression


Co-expression Network