G100322


Basic Information

Item Value
gene id G100322
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16464830 ~ 16465042 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118918
CTGTAACGTCACCACCggcacctgcccgccagagggagccctcaccTGAGTTTTGACTCCACCCTTGAGAAACACTTCCGgggttttcagggacatttaaGCAGCACGTTCACCACATGAGGACGCGAAGTATTGTTTTCGGGACATTACTGAGcgttttcttttgcattgttttgcacggtttttcttcatgtgtatgaccctggtttgttt

Function

NR:

description
PREDICTED: basic salivary proline-rich protein 1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118918 True 213 lncRNA 0.49 1 16464830 16465042

Neighbor

gene id symbol gene type direction distance location
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 381217 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 965578 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 991815 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 1264582 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 1332624 15121047 ~ 15132206 (-)
LOC113534689 NA coding upstream 116320 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 215880 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 473849 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 623599 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 957319 17422361 ~ 17478285 (-)
G100315 NA non-coding downstream 80042 16384557 ~ 16384788 (-)
G100309 NA non-coding downstream 108015 16356598 ~ 16356815 (-)
G100307 NA non-coding downstream 115043 16349457 ~ 16349787 (-)
G100302 NA non-coding downstream 146094 16318289 ~ 16318736 (-)
G100298 NA non-coding downstream 231557 16233022 ~ 16233273 (-)
G100323 NA non-coding upstream 4606 16469648 ~ 16470260 (-)
G100324 NA non-coding upstream 5315 16470357 ~ 16470614 (-)
G100386 NA non-coding upstream 118556 16583598 ~ 16584075 (-)
G100387 NA non-coding upstream 119841 16584883 ~ 16585171 (-)
G100388 NA non-coding upstream 120619 16585661 ~ 16585913 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 1107267 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2117822 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 2902256 13550680 ~ 13562574 (-)
G98770 NA other downstream 3412519 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4040852 12420437 ~ 12423978 (-)
G101178 NA other upstream 1722405 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3515027 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 3930824 20395866 ~ 20416574 (-)
G102566 NA other upstream 4488560 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4530299 20995341 ~ 21013100 (-)

Expression


Co-expression Network