rgma


Basic Information

Item Value
gene id rgma
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16657601 ~ 16680793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118934
AGTTTATTTGCTGtttgaaacaaaacagcaaatatCAAGAGATTGTATTGTTAACATTTGTGTAATGTCAGTTCTGCAGCTCTAAACTGTGAGTTGTACAAAATTTTGAGTTGTATTTGTTCTTAAGGTTTTGTATTTGTAAGTTTCTTTTAAATCTTGCATTTATTGGATGTTGAGTGAATGAATGTTTCCTTTTAATATAGTCATATTGTGTACATGAATACCTCAGACACCACAAATTATCTCTAATTAGTGGATCTTTAAAGATTTCTCTATACAAAAGTAGAAAGGTAATGTGAACTGTAATTTACTAAGAGGTGAGTCTTCTGGCGTTTGTGTTCATTACTAaagcactttgtttttttttgttttttttttcctttctagATGTGACACTTGTAAAATTACAATgggaaaaaacatttaagatGTATTACTGAATGGGAGAAGCCACACAGATCAAACTGATTTGTATATAGGATTAAAACAGTGCCACagtccacctgtgtgtgtgtatgtaaattataaattatttattcaacaaaaaaataaagtggcCTTGGATATGTGgtgtcatttcatttgtttaccATCACAAGCAGTAAACATAGACTGCCATCTGGTGGTCATATCATGATACTACAGAccttttataggaaaattattctgattattctATTATATACTTAACCCAGCCACTGGTAGtgtagtgtcagtgtcagtccCAAGCCGGGATAAAATGAGTGGGTTGTGTCAAGAAGGGTATCCGGCGTagaacctgtgccaaatcaaacaagCAGCCCAATGATCTGCTGTTGCGACCC
>XM_026927763.2
TGTGCCGCAGCGCCGCCTCTGTCCTAACGCGCTTGCTGAGGAATTTCAGCGCTCGGGACTGGAGTCCAACACGATGTAAAACCTAGTCACGGAGACATGTTTTCGGGGCACTGGTACGTTTTATGGGCAACTGACCGAAAAGAAGTTCTGTGAAACGAAATAACTGTCGTTTGTTGTTAAACGGACAGGGAGCGGAGAGTAGCGCTGGTCGGGCCGCTGCTAGATGGATGGTTATGGGGAAAGGAGCGGGAGCCGCGGCACTACGACTCGGAAAGACCCTCGTTGTATTTGTCTGCCTTCTCCAACCGGTGGCTCCACAGTGTAAGATCCTAAATTGTAACACTGAATTCTGGGCATCAGCACCAAGCTCAGGCCCAAGTGAGGAGTTCTGTGCGGCTTTGCGTGCATACAGCCACTGTGTGTGGCGCACAGCCCGCTCCTGCCGCGGTGACCTGGCCTACCATTCAGCCCAGCATGGGATCGAGGACCTCATGAGCCAGCATAATTGTTCCAGTGAGGGTCCTGTGGCCCATACAGTACCGGCCATGCCATCTGTCCCACCTCTGGTGCCTACAGACTCGGGGATACCATCAGATGGGCCAGAGCTGTGCCAGTATGAGCGGAGTGTAGGACgccccaaatacacacactgcggCTTCTTTGGCGACCCCCACTTGCGTACCTTCAATGACCAGTTCCAGACGTGCAGGGTGCTGGGGGCATGGCCACTCATTCACAACAAATACCTGTCTGTGCAGGTCACTAACACACCAGTGCTAGCTGGATCCATAGCCACAGCCACTAGCAAATTGACAATCATCTTCAAGAGCTTGCCATCCTGCACTGATCAGAAGACATACCATGCTGAGGCAGGGGAACTGGTGGCGGCATTCACTGACGGCTCACAAAGTGCAGGTGCCCTGCACATTCTAGAGAAAGTTCCTGGTCGCCATGTGGAGATCCAGGGACGCCACATTGGCGCCACACTTCTGATAAGGCAGGTGGGTGGTTTCCTGACGTTTGCTGCACGGATGCCTGAAGAGGTGACTCACTCGCTGGACGATAATGACGACCAGGACCTGTACTTGTGCCTGCATGGCTGCCCAGGTAATCAGATCATCGATTCAAGGAGTCCCGAGAGCCCCGCCCGTGGCTTTACACACCAATTGGCCATAGCCAAGTGCAAGGAACGCCTCCCAGTGGAGGACGTCTATTTCCAGTCTTGTGTTTTCGATCTGCTCTCATCAGGTGATGCTGAATTTGCACTGGCTGCCTACTATGCCCTTGAAGATGTCAAAGCTCTGCATTCAGACAAGGACAAGTATCACCTCTTTGAAAGGGATGCAGGCGCATTTAATTCGGCCTCCCAGGGATGTAGCTTTGCATTGTTGATTCTGCTTGCCATGTCTTTGTGGACTCATTTGTGTTGTTGCAAATGTGTATAGTTCCACTTGGGTGTATTTGTCGTCTTGTAATGGTCAGTGGAAAGTGTTGTATCTTCAAGTCATAGAGGCTGAACCATGGAGGCTTTCAgtcatgtgtgtttgtcttcACGCTTCCCCCAGCCATGTGTCATCTGTGTTGTTATTGAATGGATATCCAATGAGCAAGAGCCAAACTGCACACATGCTCATCATGTTGGTTTTAGAGCACAGACAGGGTGGCAGTAACAGACTCCAGGACAGAGGCTTGGAATTGGATCAAAACCTGTCCATCGTTTCAACTAAAATGAAATGCTGTTGAAAAAGGTGGTTCTCCAGCTGGTTGCTGCTCAAAAAACAGAGCCCTAGCAAGGGTCTTCTGGAAAAAACTGCAGCACAACATGAGATTTTATTAACCTTTGGTGAAGAACTTTGCTGGAGCTTCTCGTCTTTGATGTGACTCCAGCTTTGGAAAAAATGCATGCTATGTTTCTGGAAGAAACATTGAGCCAGACAAGCTGTCTGGTCTGGAAATAATGGGCCctaactgcacattttttttgtatagtgtAATGTGCTGATggtctgtgtgtggtgtgtatgtgtgcaacTGTAGGAGTTTAGAGAAATATTTCAGAATGTTCACCCAGTAGTTGTACTGTAGCTCTGGCATGGTGGTCTCTGGATCAGaaaagagatttattttttttgcctgccAAGAGTTTGTTCTTGCATGACTTGTCATACCAATAAAAAATTCATCAGCTTCACTGTTTCTCCTTGTCAGATTTGTGTGGTAGGCGTTACACACCTGCACTTTTTGCAGTATTGCAGTGCTGGGGAAAATAAGTCTCTTCTTTCTTGGTGTTCTTTTTGCTGTCCAAGTTGGACTGTTTGGTAGCTGTGAGTACAGGGCAAGATTAACATGAGGACACATGAAGAATAGTTCCCCCgactaactaaataataattaatcgACTATATAAATGCAATTGTTCAACGCCATTGTGAGTTCAAACCGACAGAATTGCAAGACTGTTTTCTGTTTAACATATCCTCATTTGCCAACATATAAAGCCAAAAAAAGCCACTTTTGGTGAATATTACAGGAGATATTGCTCCCATATGTTCATTCATCATCCTGACTGTGACAGAATAGAGCTCCTACTCTCCAGTACAAACAGGTGTGCTGACGTGGCTGGACTTTAGGGCCTGTTTGCTCCATAACTCTGGAAATCTGAGAGTTTATGGCAGAGTATTTTGTTTTGCCAAAGAACGAGTCATTTTAGCCAGTAATCTCCTCAAGTAATtcaattttaaacacacacacacattgtgctgCTAAACTACAATGGACTTTTCCAGTGCAGGGAGGCACAAGTTCCCTgggttcagggtgtgtgtgcatgaagaGTGTGTGCCAACAACAAGGGTTGTTTTTCcattacaaatacacacacatagccaCTGATCTTTCATAcgagacatttttattttgtttgttccaGATGCCATCGATAGTCTTCTGACATTCATTTATTACctgattaaaaagtgaaaatatcagtGTATCACCTGTCATGTGAAAGTTATTTATGACTAAAGAAATCAGGTCATATTAGCCTTGACACAAAGTGTCACTCTTTATGGCAGGTACCTGAGTGAGTAATTATAGATCTAATGTTTAATTTCAGAGTCTGTATGAGAATTTTATAATCAGTATATTTCCACAACATTTTCATTACCAGCCATCATGGATCAATATTACAGACAacaatttaatgtgtttctaagAAGTGTTTCTGTAAGATTTTCGAGTTCTGAGTGtcgtgaaaataaaatgtaattaatgacTTAAGAGAGTTTCTCCACATTAGCTTATTTCTATATTCTGTTAAGTGTCACAGGCCTTAATTACTACTGCGAAAGCCTGTGCTGGTACAGTTTGTTTACAAGTTTATTTGCTGtttgaaacaaaacagcaaatatCAAGAGATTGTATTGTTAACATTTGTGTAATGTCAGTTCTGCAGCTCTAAACTGTGAGTTGTACAAAATTTTGAGTTGTATTTGTTCTTAAGGTTTTGTATTTGTAAGTTTCTTTTAAATCTTGCATTTATTGGATGTTGAGTGAATGAATGTTTCCTTTTAATATAGTCATATTGTGTACATGAATACCTCAGACACCACAAATTATCTCTAATTAGTGGATCTTTAAAGATTTCTCTATACAAAAGTAGAAAGGTAATGTGAACTGTAATTTACTAAGAGGTGAGTCTTCTGGCGTTTGTGTTCATTACTAaagcactttgtttttttttgttttttttttcctttctagATGTGACACTTGTAAAATTACAATgggaaaaaacatttaagatGTATTACTGAATGGGAGAAGCCACACAGATCAAACTGATTTGTATATAGGATTAAAACAGTGCCACagtccacctgtgtgtgtgtatgtaaattataaattatttattcaacaaaaaaataaagtggcCTTGGATA

Function

NR:

description
repulsive guidance molecule A-like

GO:

id name namespace
GO:0046658 anchored component of plasma membrane cellular_component

KEGG:

id description
K23096 RGMA; repulsive guidance molecule A

RNA

RNA id representative length rna type GC content exon number start site end site
TU118934 False 824 lncRNA 0.34 1 16679970 16680793
XM_026927763.2 True 3941 mRNA 0.43 3 16657601 16680535

Neighbor

gene id symbol gene type direction distance location
LOC113534621 NA coding upstream 146622 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 397428 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 801489 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 848485 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 985267 15660992 ~ 15672334 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 83902 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 158082 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 298142 16978935 ~ 16983976 (+)
blm blm coding downstream 360564 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 682332 17363125 ~ 17378340 (+)
G100341 NA non-coding upstream 72781 16584344 ~ 16584820 (+)
G100340 NA non-coding upstream 73654 16583621 ~ 16583947 (+)
G100301 NA non-coding upstream 338878 16318273 ~ 16318723 (+)
G100296 NA non-coding upstream 449187 16208165 ~ 16208414 (+)
G100292 NA non-coding upstream 455531 16201861 ~ 16202070 (+)
LOC117597522 NA non-coding downstream 70214 16751007 ~ 16755979 (+)
G100360 NA non-coding downstream 77346 16758139 ~ 16758343 (+)
G100362 NA non-coding downstream 79518 16760311 ~ 16760534 (+)
G100370 NA non-coding downstream 141575 16822368 ~ 16823102 (+)
G100379 NA non-coding downstream 257942 16938735 ~ 16939728 (+)
G100345 NA other upstream 56534 16600257 ~ 16601067 (+)
G100306 NA other upstream 307814 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1311455 15300482 ~ 15346146 (+)
G99341 synm other upstream 2133121 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2615149 14035228 ~ 14042452 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 719633 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 808753 17489546 ~ 17493092 (+)
G101403 NA other downstream 1870653 18551446 ~ 18551724 (+)
G101419 NA other downstream 1917921 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 2057550 18738343 ~ 18739998 (+)

Expression


Co-expression Network