G100341


Basic Information

Item Value
gene id G100341
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16584344 ~ 16584820 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118947
cagagaattgtctagggaaattgcaagatcctgagatggggatgaatcacctgggatgaacagcagttcagttttggtgggattaagtttcagctggtgagttgtcatccatgatgagatgtcagccagacaagctgatatccgagcagaaacatgagagtctgagggagggaaggagaggatgatttgagtgtcatctgcatagcagtggtatgaaaacccatgtgaggatatgaccgcaccaagagatcgagtatagagggagaacaggagaggaccaagtactgagccttgtggaacaccagtggagagtctgcgaggagcagatgtggatcccctccatgtcacctgatatgaccgatcttccaggtaggaagcaaaccattgccatgctgtaccacgaattcctaggctcatgagggtggataggagagtcttgtggttcaccgtgtcaaatgctgctgaaaggtcaaggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118947 True 477 lncRNA 0.49 1 16584344 16584820

Neighbor

gene id symbol gene type direction distance location
LOC113534621 NA coding upstream 73365 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 324171 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 728232 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 775228 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 912010 15660992 ~ 15672334 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 179875 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 254055 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 394115 16978935 ~ 16983976 (+)
blm blm coding downstream 456537 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 778305 17363125 ~ 17378340 (+)
G100340 NA non-coding upstream 397 16583621 ~ 16583947 (+)
G100301 NA non-coding upstream 265621 16318273 ~ 16318723 (+)
G100296 NA non-coding upstream 375930 16208165 ~ 16208414 (+)
G100292 NA non-coding upstream 382274 16201861 ~ 16202070 (+)
G100285 NA non-coding upstream 386511 16197618 ~ 16197833 (+)
G100355 NA non-coding downstream 84567 16669387 ~ 16670025 (+)
LOC117597522 NA non-coding downstream 166187 16751007 ~ 16755979 (+)
G100360 NA non-coding downstream 173319 16758139 ~ 16758343 (+)
G100362 NA non-coding downstream 175491 16760311 ~ 16760534 (+)
G100370 NA non-coding downstream 237548 16822368 ~ 16823102 (+)
G100306 NA other upstream 234557 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1238198 15300482 ~ 15346146 (+)
G99341 synm other upstream 2059864 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2541892 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 2627993 13932539 ~ 13956351 (+)
G100345 NA other downstream 15437 16600257 ~ 16601067 (+)
rgma NA other downstream 72781 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 815606 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 904726 17489546 ~ 17493092 (+)
G101403 NA other downstream 1966626 18551446 ~ 18551724 (+)

Expression


Co-expression Network