G100345


Basic Information

Item Value
gene id G100345
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16600257 ~ 16601067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118951
CTTCTCTTCTCAAGCCAAAGGAGTGTGGAGGCGGATCTTTACCCAACATGCAGCTTTATTATTGGGCTGCTCAGATCAAACAAATGCTCAGATGGTTTTTAAATGATACAGACTCTCTATGGGTCAGTATGGAATCCTTTGCATGTGCCCCGAGAATACTAACATCTCttccattcattaataattttaagaaGATCCAGCCAGTAGTTGAAAACTTTGTTATTTAACACCCTTTTGGCTTGGGAAGATGTTAGAAAATATCTTCATCTCCCCAGGAATTTAACCATGCAATCCCCAATCATTTTGAACCCTGATCTTCCTGCTTCGTTAGCTAGTATTGGCCTTCGGACCTGGGCAGAAAAAGGTATTTTTAATTCAGCCAGCTTATTTACAGATAATGTTCTTAAATCTTTTGAGACACTTAGATCAGATTATCAACTTCCTAGAACAGATTTTTTCAAATTTCTCCAGCTACGTCATTTTATTCAATCTGAAATGAGACAGGGTAAAATTCGCTGGGAAATGTCTGACATTGAGAACCGTCTCTTTCTCCCAGGGGCGTTGAAGGGTCAGATTTCTTATCTGTATGGCTCCCTTTTATCAGAAGCCTCGTCACCCTTAAATCCTCTAAGAAAGGTTTGGGAGAAGGATATTGgccaaacattcactgatgatGAATGGCTTTCTATATGTGAGGAGGTATTTCATAAATCAACTTCAATTTCTGTGCATGAGCAAAACTTTAAATTCATATACAGGACATATCTCACCCCTGTACGCCTCCACAAAATATATCCAAACGTATCTCAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118951 True 811 TUCP 0.39 1 16600257 16601067

Neighbor

gene id symbol gene type direction distance location
LOC113534621 NA coding upstream 89278 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 340084 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 744145 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 791141 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 927923 15660992 ~ 15672334 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 163628 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 237808 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 377868 16978935 ~ 16983976 (+)
blm blm coding downstream 440290 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 762058 17363125 ~ 17378340 (+)
G100341 NA non-coding upstream 15437 16584344 ~ 16584820 (+)
G100340 NA non-coding upstream 16310 16583621 ~ 16583947 (+)
G100301 NA non-coding upstream 281534 16318273 ~ 16318723 (+)
G100296 NA non-coding upstream 391843 16208165 ~ 16208414 (+)
G100292 NA non-coding upstream 398187 16201861 ~ 16202070 (+)
G100355 NA non-coding downstream 68320 16669387 ~ 16670025 (+)
LOC117597522 NA non-coding downstream 149940 16751007 ~ 16755979 (+)
G100360 NA non-coding downstream 157072 16758139 ~ 16758343 (+)
G100362 NA non-coding downstream 159244 16760311 ~ 16760534 (+)
G100370 NA non-coding downstream 221301 16822368 ~ 16823102 (+)
G100306 NA other upstream 250470 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1254111 15300482 ~ 15346146 (+)
G99341 synm other upstream 2075777 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2557805 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 2643906 13932539 ~ 13956351 (+)
rgma NA other downstream 56534 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 799359 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 888479 17489546 ~ 17493092 (+)
G101403 NA other downstream 1950379 18551446 ~ 18551724 (+)
G101419 NA other downstream 1997647 18598714 ~ 18599375 (+)

Expression


Co-expression Network