G100355


Basic Information

Item Value
gene id G100355
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16669387 ~ 16670025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118961
CAGTGGTACCCTCCAACAAGGCAATGTCTCTGAAGTATGTTAGCCAATTGGAATTTGTAGGAGTGGATGGTTCCACCCAAAGCTTTAAGACAATCTTTTTGGCAGCGGTACCTGCTGCCAGTAAAGTCCTTTTTGATGTATGTTTAGCTGGAGTGTGGTGTCATCCAATAGCAGGAAGAGCAAGGGGTCCTTGGGTATCTCCAAGTGTAAAATGTTTGAGAGAACAGTGCATACAAAAGTCCAGAATGAGACCACTATAGGGCACTCACAAAACATGTGCATATAAGAGCCTGCTgtatatttagatttagattgcAAAGATGACAATAAGGATCAGATCTAACCTTCACTTTATGCAATAAACCTGGAGCCCTATTAATGAGGTTATAGTGGATCAGTTAGCGTGCAAGGTTCTTAAAGGTAGTAAAATACCTGGCCCATACCACATCCCAGTCAGGTTTAACCCTTAATTCCCATTCCTAAAAGCAGGTAACTGGCATACTTGAGTACTGATGCAACAGGATGGAATTATAGACCCTGGAGACTATGGGTTTTTGCCAGGTTTTAGTAGTACTGATATAagggctgtgtttgtgtgtggaggtAGTGCAGATTTTTGTTTAAAGGAAATCCATCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118961 True 639 lncRNA 0.42 1 16669387 16670025

Neighbor

gene id symbol gene type direction distance location
LOC113534621 NA coding upstream 158408 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 409214 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 813275 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 860271 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 997053 15660992 ~ 15672334 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 94670 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 168850 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 308910 16978935 ~ 16983976 (+)
blm blm coding downstream 371332 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 693100 17363125 ~ 17378340 (+)
G100341 NA non-coding upstream 84567 16584344 ~ 16584820 (+)
G100340 NA non-coding upstream 85440 16583621 ~ 16583947 (+)
G100301 NA non-coding upstream 350664 16318273 ~ 16318723 (+)
G100296 NA non-coding upstream 460973 16208165 ~ 16208414 (+)
G100292 NA non-coding upstream 467317 16201861 ~ 16202070 (+)
LOC117597522 NA non-coding downstream 80982 16751007 ~ 16755979 (+)
G100360 NA non-coding downstream 88114 16758139 ~ 16758343 (+)
G100362 NA non-coding downstream 90286 16760311 ~ 16760534 (+)
G100370 NA non-coding downstream 152343 16822368 ~ 16823102 (+)
G100379 NA non-coding downstream 268710 16938735 ~ 16939728 (+)
G100345 NA other upstream 68320 16600257 ~ 16601067 (+)
G100306 NA other upstream 319600 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1323241 15300482 ~ 15346146 (+)
G99341 synm other upstream 2144907 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2626935 14035228 ~ 14042452 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 730401 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 819521 17489546 ~ 17493092 (+)
G101403 NA other downstream 1881421 18551446 ~ 18551724 (+)
G101419 NA other downstream 1928689 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 2068318 18738343 ~ 18739998 (+)

Expression


Co-expression Network