G100360


Basic Information

Item Value
gene id G100360
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16758139 ~ 16758343 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118966
ATAGAATCGATGTTGATGGAACTGTTGTGTTCATCACTGACCTCTTCCATCTCTGGCTCTGGCATATTACTGCACTGTGTATCGTTCACTCCAGGCTCCAGCTCCCCCGGTGCTCTGCCGCTTGCCAtccccacactgctgctgctgtaacctGGCCGAGTCGCCCTCTGAGCTCCCTGGCTGCACAGTGGACAGCCAAACTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118966 True 205 lncRNA 0.55 1 16758139 16758343

Neighbor

gene id symbol gene type direction distance location
LOC113534621 NA coding upstream 247160 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 497966 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 902027 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 949023 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 1085805 15660992 ~ 15672334 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 6352 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 80532 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 220592 16978935 ~ 16983976 (+)
blm blm coding downstream 283014 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 604782 17363125 ~ 17378340 (+)
LOC117597522 NA non-coding upstream 2160 16751007 ~ 16755979 (+)
G100355 NA non-coding upstream 88114 16669387 ~ 16670025 (+)
G100341 NA non-coding upstream 173319 16584344 ~ 16584820 (+)
G100340 NA non-coding upstream 174192 16583621 ~ 16583947 (+)
G100301 NA non-coding upstream 439416 16318273 ~ 16318723 (+)
G100362 NA non-coding downstream 1968 16760311 ~ 16760534 (+)
G100370 NA non-coding downstream 64025 16822368 ~ 16823102 (+)
G100379 NA non-coding downstream 180392 16938735 ~ 16939728 (+)
G100480 NA non-coding downstream 213487 16971830 ~ 16972238 (+)
G100499 NA non-coding downstream 252372 17010715 ~ 17024228 (+)
rgma NA other upstream 77346 16657601 ~ 16680793 (+)
G100345 NA other upstream 157072 16600257 ~ 16601067 (+)
G100306 NA other upstream 408352 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1411993 15300482 ~ 15346146 (+)
G99341 synm other upstream 2233659 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 642083 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 731203 17489546 ~ 17493092 (+)
G101403 NA other downstream 1793103 18551446 ~ 18551724 (+)
G101419 NA other downstream 1840371 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1980000 18738343 ~ 18739998 (+)

Expression


Co-expression Network