G100362


Basic Information

Item Value
gene id G100362
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16760311 ~ 16760534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118968
GTTGATAGGTTAGTGATTTTGCTTCTTAATTTGCATAGAAAAAGTTCTATGGCTAGGACATATAGCATGCTGGACAGTTCTATGGCTAGGACATATAGCATGCTGGACAGAGACTTTCTTCAGACTGTAGTATGTCTAGAAAGTCCTGCCCTAACACTGACCAGAAAGCCTTACATAACTCCACTGAGAGCCCCTAATGCCACTGAGTGCAGCCTCTAGCCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118968 True 224 lncRNA 0.44 1 16760311 16760534

Neighbor

gene id symbol gene type direction distance location
LOC113534621 NA coding upstream 249332 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 500138 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 904199 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 951195 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 1087977 15660992 ~ 15672334 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 4161 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 78341 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 218401 16978935 ~ 16983976 (+)
blm blm coding downstream 280823 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 602591 17363125 ~ 17378340 (+)
G100360 NA non-coding upstream 1968 16758139 ~ 16758343 (+)
LOC117597522 NA non-coding upstream 4332 16751007 ~ 16755979 (+)
G100355 NA non-coding upstream 90286 16669387 ~ 16670025 (+)
G100341 NA non-coding upstream 175491 16584344 ~ 16584820 (+)
G100340 NA non-coding upstream 176364 16583621 ~ 16583947 (+)
G100370 NA non-coding downstream 61834 16822368 ~ 16823102 (+)
G100379 NA non-coding downstream 178201 16938735 ~ 16939728 (+)
G100480 NA non-coding downstream 211296 16971830 ~ 16972238 (+)
G100499 NA non-coding downstream 250181 17010715 ~ 17024228 (+)
LOC117597540 NA non-coding downstream 277517 17038051 ~ 17039276 (+)
rgma NA other upstream 79518 16657601 ~ 16680793 (+)
G100345 NA other upstream 159244 16600257 ~ 16601067 (+)
G100306 NA other upstream 410524 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1414165 15300482 ~ 15346146 (+)
G99341 synm other upstream 2235831 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 639892 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 729012 17489546 ~ 17493092 (+)
G101403 NA other downstream 1790912 18551446 ~ 18551724 (+)
G101419 NA other downstream 1838180 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1977809 18738343 ~ 18739998 (+)

Expression


Co-expression Network