G100370


Basic Information

Item Value
gene id G100370
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16822368 ~ 16823102 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118977
cctaatggttagagtctcggacttgtaacccgaaggtgaacctgaaggttgtgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagtgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagtaaaaaggctgcccactgctgtgtgtgttcactaatgtgtgtgcacttggatgggttaaatgcagagcacaaattccgaatatgggtcaccatacttggccacacgtcacttcacttcacttcaatacATGGTCAATAGTACACTCTCAGCTATAAGACAAGGTTATCATTGAAACATTGCCATCAAATTTGTTATGTCCCAGATCCCACTCCCTGCATAGGCAAATGAAATGACCCGACCCATACCCACCAGAAGGGGGTGCTATAATGAATGACTTTTTATGTCAGCAACAACTATAGGGAATAGTAAAACGTTCTATATCAGCAGAATTCCTCAGTCCTGCATCTTTTTGCCATATGGTTTAATTACTTTTCACTGATGTGCTTTGTGCCATTTTCTAAAAAGCTTTCTTTTTCAAACTAGTCCTCATCTGCTCAGCATACAATATGAAATCTGAAAACAAtactaaaacaattttaattagCCAAACCGTTTGGCTGCTACAGGTCAGTGAAATTTTAGACCATTGCATGCATTAAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118977 True 735 lncRNA 0.44 1 16822368 16823102

Neighbor

gene id symbol gene type direction distance location
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 6096 16764695 ~ 16816272 (+)
LOC113534621 NA coding upstream 311389 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 562195 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 966256 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 1013252 15723423 ~ 15809116 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 15773 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 155833 16978935 ~ 16983976 (+)
blm blm coding downstream 218255 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 540023 17363125 ~ 17378340 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 707332 17530434 ~ 17541653 (+)
G100362 NA non-coding upstream 61834 16760311 ~ 16760534 (+)
G100360 NA non-coding upstream 64025 16758139 ~ 16758343 (+)
LOC117597522 NA non-coding upstream 66389 16751007 ~ 16755979 (+)
G100355 NA non-coding upstream 152343 16669387 ~ 16670025 (+)
G100341 NA non-coding upstream 237548 16584344 ~ 16584820 (+)
G100379 NA non-coding downstream 115633 16938735 ~ 16939728 (+)
G100480 NA non-coding downstream 148728 16971830 ~ 16972238 (+)
G100499 NA non-coding downstream 187613 17010715 ~ 17024228 (+)
LOC117597540 NA non-coding downstream 214949 17038051 ~ 17039276 (+)
G100495 NA non-coding downstream 264852 17087954 ~ 17090706 (+)
rgma NA other upstream 141575 16657601 ~ 16680793 (+)
G100345 NA other upstream 221301 16600257 ~ 16601067 (+)
G100306 NA other upstream 472581 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1476222 15300482 ~ 15346146 (+)
G99341 synm other upstream 2297888 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 577324 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 666444 17489546 ~ 17493092 (+)
G101403 NA other downstream 1728344 18551446 ~ 18551724 (+)
G101419 NA other downstream 1775612 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1915241 18738343 ~ 18739998 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028576 BX465862.4 non-coding NC_007115.7 CM002888.2 11610718 ~ 11692199 (-)