G100379


Basic Information

Item Value
gene id G100379
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16938735 ~ 16939728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118986
aaaagagtaaaatattaaagtataaCTATATAAGactataaacaacaacaacaacaaaaaaaactataagtattttaaacattatatttacgtataaaatatatacatataactgtgtaaagaaataaaacctaTTTTTTCTTAATCTGTTCCAGCCACTGCTCTTTTGTTAGAGTCTCAGTATTCGGACAGTAAATAGTGCCCTTATACTGGCTATGTCCAGTCTCCGCTGTCCTGTGGCGACCACATTTTTTTGCAAGTATTCGCCTCCACTCTTCTTGTATACGCACGTGGTCGACGTGGCATTTGTGGTTGGACAGCCGAAGCTGGAGGAATACTGCTAGCTTGGGGTGGCTGGAGCGCTACAGAAGGTGGAGTGCTGCTGGGCTGAGGAGTGGTGGTGGCTGGGGGTCCAGGGACCACAAACACGGTGTACGTGGGGCTAGGGTGGGGAGCAAGTGTGACGAAAGCGCCTGGAGGTCGAGGAAGCAACTGTCTTTGGGGTGCCAGCTTTGGTCTCGCTGTCTCACGTGGGTCTGGGGGGGACGTGGAGGTGATGCACCTCTTCTGTCTGGCTTGCCCTACCGTGTTGTGTGGCAAGCTGTACGCGTGCTCTTGCCCTTGCCCTTGCAATGGTGGTGCAGCCGGACGAGCGCTGGCAGATTGCAGAGGCTCAGCGGCAACAGGAAGAGGATCAGGCAGATCCATTCCTTGCAACAAGAGAGTCAGGTCTTGCCTTTTCACTCTCTCATTGTGCCATTGAACCAGAGTCGTCTGATTCACCTCCACCAGCTGCAGATTGGTGCTCTGTATGATGGCCCCATTGTTCAAGATCAGCTGCCGGATCCTGCGGTAGTCGTGCAGGATTAGAGACCATCTTGTCAGGGAGCCCTTGCCCTTCCTCCTCGGATTTTTGTGAATCCTGCAGAGTCTGATGAAAATGGCCTCCACGAGCCGGCAACAGTCTGGCCACTGGGCGGGTGAAGCTGTCGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118986 True 994 lncRNA 0.50 1 16938735 16939728

Neighbor

gene id symbol gene type direction distance location
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 10093 16838875 ~ 16928642 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 122463 16764695 ~ 16816272 (+)
LOC113534621 NA coding upstream 427756 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 678562 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 1082623 15812514 ~ 15856112 (+)
ppp1r15b LOC108263894 coding downstream 39207 16978935 ~ 16983976 (+)
blm blm coding downstream 101629 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 423397 17363125 ~ 17378340 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 590706 17530434 ~ 17541653 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding downstream 642155 17581883 ~ 17602174 (+)
G100370 NA non-coding upstream 115633 16822368 ~ 16823102 (+)
G100362 NA non-coding upstream 178201 16760311 ~ 16760534 (+)
G100360 NA non-coding upstream 180392 16758139 ~ 16758343 (+)
LOC117597522 NA non-coding upstream 182756 16751007 ~ 16755979 (+)
G100355 NA non-coding upstream 268710 16669387 ~ 16670025 (+)
G100480 NA non-coding downstream 32102 16971830 ~ 16972238 (+)
G100499 NA non-coding downstream 70987 17010715 ~ 17024228 (+)
LOC117597540 NA non-coding downstream 98323 17038051 ~ 17039276 (+)
G100495 NA non-coding downstream 148226 17087954 ~ 17090706 (+)
G100532 NA non-coding downstream 211225 17150953 ~ 17152232 (+)
rgma NA other upstream 257942 16657601 ~ 16680793 (+)
G100345 NA other upstream 337668 16600257 ~ 16601067 (+)
G100306 NA other upstream 588948 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1592589 15300482 ~ 15346146 (+)
G99341 synm other upstream 2414255 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 460698 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 549818 17489546 ~ 17493092 (+)
G101403 NA other downstream 1611718 18551446 ~ 18551724 (+)
G101419 NA other downstream 1658986 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1798615 18738343 ~ 18739998 (+)

Expression


Co-expression Network