G100392


Basic Information

Item Value
gene id G100392
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16599496 ~ 16599800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU118999
GTCTGCATATAATGATATACGGTGTTCCATCCCACCTGCCTTCACCCCCTGGATGCCATTATGCATGCGAATACTTTCTGCCAAGGGTTCGATAAACAAGGCAAACAGTAGCGGTGACAGGGGGCAACCCTGACGGCAGCCTCTATGAATTGAAAATTTACCTGATAATAAGCCATTAGTGTTGACCACAGCTGTTGAATCAGAGTAAAAAGGTCTGACTAATCTGATGTAGTTAGAGCCCAAGTTGAATTTGTCCAACACTTGAAACAAAAACCTCCACTCGACCCTATCAAATGCTTTTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118999 True 305 lncRNA 0.44 1 16599496 16599800

Neighbor

gene id symbol gene type direction distance location
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 515883 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 1100244 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 1126481 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 1399248 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 1467290 15121047 ~ 15132206 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 81122 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 339091 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 488841 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 822561 17422361 ~ 17478285 (-)
LOC117597582 NA coding upstream 1120745 17720545 ~ 17725320 (-)
G100388 NA non-coding downstream 13583 16585661 ~ 16585913 (-)
G100387 NA non-coding downstream 14325 16584883 ~ 16585171 (-)
G100386 NA non-coding downstream 15421 16583598 ~ 16584075 (-)
G100324 NA non-coding downstream 128882 16470357 ~ 16470614 (-)
G100323 NA non-coding downstream 129236 16469648 ~ 16470260 (-)
G100396 NA non-coding upstream 16108 16615908 ~ 16616224 (-)
G100397 NA non-coding upstream 55140 16654940 ~ 16655237 (-)
G100399 NA non-coding upstream 57846 16657646 ~ 16657909 (-)
G100402 NA non-coding upstream 66037 16665837 ~ 16666054 (-)
G100405 NA non-coding upstream 68398 16668198 ~ 16668540 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 1241933 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2252488 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3036922 13550680 ~ 13562574 (-)
G98770 NA other downstream 3547185 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4175518 12420437 ~ 12423978 (-)
G101178 NA other upstream 1587647 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3380269 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 3796066 20395866 ~ 20416574 (-)
G102566 NA other upstream 4353802 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4395541 20995341 ~ 21013100 (-)

Expression


Co-expression Network