G100396


Basic Information

Item Value
gene id G100396
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16615908 ~ 16616224 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119003
TTGACCTTGGACCTCAGAAAACACAGTGGACCAACACCAGCAGATGACATGGCACCCCAAACCATCACTGACTGTGGAAACTTTACACTGGACCTCAAGCAACGTGGATTCTGtgcctctcctctcttcctccagaCTCTGGGACCCTGATTTCCAAAGGAAATGCAAAATTTACTTTCATCAGAGAACATAACTTTGGACCACTCAGCAGCAGTCCAGTCCTTTTTGTCTTTAGCCCAGGCGAGACGCTTCTGACGCTGTCTGTTGTTCAAGAGTGGCTTGACACAAGGAATGCAACAGCTGAAACCCATGTCTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119003 True 317 lncRNA 0.48 1 16615908 16616224

Neighbor

gene id symbol gene type direction distance location
LOC113534689 NA coding downstream 5598 16581362 ~ 16610310 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 532295 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 1116656 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 1142893 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 1415660 15177211 ~ 15200248 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 64698 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 322667 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 472417 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 806137 17422361 ~ 17478285 (-)
LOC117597582 NA coding upstream 1104321 17720545 ~ 17725320 (-)
G100392 NA non-coding downstream 16108 16599496 ~ 16599800 (-)
G100388 NA non-coding downstream 29995 16585661 ~ 16585913 (-)
G100387 NA non-coding downstream 30737 16584883 ~ 16585171 (-)
G100386 NA non-coding downstream 31833 16583598 ~ 16584075 (-)
G100324 NA non-coding downstream 145294 16470357 ~ 16470614 (-)
G100397 NA non-coding upstream 38716 16654940 ~ 16655237 (-)
G100399 NA non-coding upstream 41422 16657646 ~ 16657909 (-)
G100402 NA non-coding upstream 49613 16665837 ~ 16666054 (-)
G100405 NA non-coding upstream 51974 16668198 ~ 16668540 (-)
G100406 NA non-coding upstream 125222 16741446 ~ 16751026 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 1258345 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2268900 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3053334 13550680 ~ 13562574 (-)
G98770 NA other downstream 3563597 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4191930 12420437 ~ 12423978 (-)
G101178 NA other upstream 1571223 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3363845 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 3779642 20395866 ~ 20416574 (-)
G102566 NA other upstream 4337378 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4379117 20995341 ~ 21013100 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G326542 NA non-coding NW_019172906.1 APWO02000027.1 5379421 ~ 5381458 (+)