G100405


Basic Information

Item Value
gene id G100405
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16668198 ~ 16668540 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119012
aaccgtttaggaattacagccattttttacagagttcctccattttcacaggctcaaaagtaatgggacaaactaatataatcataaatattaggattatttttattacttggaggtaaatcctttgcagtcaatgactacctgaagtgtggaccccatggacatcaccaaatgctgagtttcctcccttgagatgatttgccaggtctttactgcagccatcttcagttgctgcttgtttgtgggtcattctgccttcagatttgtcttcagtaagtgaaaagcagctcagttgggttgaggtcaggtgactgactcggccatttaagaacatttaatttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119012 True 343 lncRNA 0.40 1 16668198 16668540

Neighbor

gene id symbol gene type direction distance location
LOC113534689 NA coding downstream 57888 16581362 ~ 16610310 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 584585 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 1168946 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 1195183 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 1467950 15177211 ~ 15200248 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 12382 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 270351 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 420101 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 753821 17422361 ~ 17478285 (-)
LOC117597582 NA coding upstream 1052005 17720545 ~ 17725320 (-)
G100402 NA non-coding downstream 2144 16665837 ~ 16666054 (-)
G100399 NA non-coding downstream 10289 16657646 ~ 16657909 (-)
G100397 NA non-coding downstream 12961 16654940 ~ 16655237 (-)
G100396 NA non-coding downstream 51974 16615908 ~ 16616224 (-)
G100392 NA non-coding downstream 68398 16599496 ~ 16599800 (-)
G100406 NA non-coding upstream 72906 16741446 ~ 16751026 (-)
G100414 NA non-coding upstream 92005 16760545 ~ 16761166 (-)
G100416 NA non-coding upstream 93392 16761932 ~ 16762144 (-)
G100439 LOC107586879,LOC107732307 non-coding upstream 147808 16816348 ~ 16819150 (-)
G100444 NA non-coding upstream 156664 16825204 ~ 16825599 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 1310635 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2321190 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3105624 13550680 ~ 13562574 (-)
G98770 NA other downstream 3615887 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4244220 12420437 ~ 12423978 (-)
G101178 NA other upstream 1518907 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3311529 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 3727326 20395866 ~ 20416574 (-)
G102566 NA other upstream 4285062 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4326801 20995341 ~ 21013100 (-)

Expression


Co-expression Network