G100416


Basic Information

Item Value
gene id G100416
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16761932 ~ 16762144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119030
GTCACAGTGTTCACAGACTGATGAGATGAATGTGCTTTAGACAGATACAGGAGATCCTTCATCCCCACTGCCATCAGGCTCTACAACACCTTAGCCAATGGCAGATGACTAATCACTACTCTCATTACTTTACTACTTCACTAATTtctactactctcactactttttactactcttactactttctttcttagttatctacaagactacctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119030 True 213 lncRNA 0.39 1 16761932 16762144

Neighbor

gene id symbol gene type direction distance location
chd2 chd2,LOC107690375,LOC107715217 coding downstream 20861 16680922 ~ 16741071 (-)
LOC113534689 NA coding downstream 151622 16581362 ~ 16610310 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 678319 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 1262680 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 1288917 15471629 ~ 15473015 (-)
LOC117597525 NA coding upstream 176747 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 326497 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 660217 17422361 ~ 17478285 (-)
LOC117597582 NA coding upstream 958401 17720545 ~ 17725320 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding upstream 1520475 18282619 ~ 18524226 (-)
G100414 NA non-coding downstream 766 16760545 ~ 16761166 (-)
G100406 NA non-coding downstream 10906 16741446 ~ 16751026 (-)
G100405 NA non-coding downstream 93392 16668198 ~ 16668540 (-)
G100402 NA non-coding downstream 95878 16665837 ~ 16666054 (-)
G100399 NA non-coding downstream 104023 16657646 ~ 16657909 (-)
G100439 LOC107586879,LOC107732307 non-coding upstream 54204 16816348 ~ 16819150 (-)
G100444 NA non-coding upstream 63060 16825204 ~ 16825599 (-)
LOC117597576 NA non-coding upstream 76772 16838916 ~ 16840109 (-)
G100408 NA non-coding upstream 158423 16920567 ~ 16933822 (-)
G100604 NA non-coding upstream 352971 17115115 ~ 17115334 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 1404369 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2414924 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3199358 13550680 ~ 13562574 (-)
G98770 NA other downstream 3709621 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4337954 12420437 ~ 12423978 (-)
G101178 NA other upstream 1425303 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3217925 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 3633722 20395866 ~ 20416574 (-)
G102566 NA other upstream 4191458 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4233197 20995341 ~ 21013100 (-)

Expression


Co-expression Network