G100495


Basic Information

Item Value
gene id G100495
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17087954 ~ 17090706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU119127
tatatatatatatatatatatatatatatatataatacacacacacacacacacacacactcatacccgTACCctacatatttacatatccACCCAGTCACTAGGGACCACCCCACTTTTGGGAAGAACCTACCACAAGAACAGATTCCCTGCAGGGTACTATGGACACAccattcaaaatattaaaaatgataagatTTTACCATTAAATAATTTTCCCCTACACCCctaagaaaggaaaaaaagggtCAAACTAAGCTTAATGAAATCTGAGATATTCTGTGATAGTGTTTAAACAATTTTcaatatcttgttttttttttttttttgcattttttgcttTTAGAAGTTTTGGCTATAAATCCACAATGGAAATTCTACAATGGCTGCaaaatgaatgtgcacatatTCATCATTCAGTTTTATCATGTGAGGACATAGCCTCAAGGTTCAaccataataaataaacaaatgtctgTCATAGCAAACAAATAATAGGTGGGTGTTAGGAGCTTGAACTGGATAGAGGATCATATGACCTGTATATTatatgaaaatctgaaaatgttcataagGCCATATAGCACAACATCAGAAATTAGTCCACTTGTTTACATTCTGTACCTCATTCAACTTCCAACATTATCAAAGTTTAGGGAGTAACGCATACCCGATATCGATTAAACTAGCTGAGGTGTTGGGTTCAAATTGGCTATTGGTTAGCCTGATCACACTACGCCCTTTCACCCAAACCATTTAACCATTAAATAATTTTCCCTTACTCCCCTCACAAAAAGATAGTCACAAACTTTCTCACACTCCTTTGTTCTTGCATATGCGAATGCTCAGAAGAacttgctcattttttttgtctgttcaaATTCACATTCAATATACACAAAAGATTCTTTTAAGAGCTACATACTgaattttccaaatattttaagtctaacacacacacacacaaaaacattgcCCCTCTACAGGCCTGGGTCACATGGCAGAACACTACATTTACTGGTTGCAacggtcagtttttttttttccatatcgCCTTCAAAATAATCTGTCAAAATACTTCAGCGTACCCACACCATTTATTGATTAGCAACATTCAACACTCACTCCACTAACAGTCCACCTCTTGAACCAACTTCTTGAACCACGTGCTAAGTGAATTGCTGCTCATTAATTAATCAGTGCTTGAGTTATTTTCTTTAAGGTATAGCACcctaataaattataatatataaattataattagaaATTGTATAAATTATTAACAGGCAAATGAGGGAGGAATTGAGAGTGAATTCTGTTGAAGGGATTCCTTGTCTACCAAAAATGTTCAAATCCATTTCTTCATAAACTCCATTTTTTTCCAACCTCACTTAAACAATTGGCTTGTAGCTTCTTGTGCCACCTCCTAAAAGATTTACCATAAATGCATAATGAACAGTAATGAAGTATGTGTTATAGTTAAATAAACTCAAGTTATTTCTTgttcttctgttttgttttgttttttgttgttccaaaagggaaaataatcaaaaaaggTATCATCtcataaaaataatgataaaagaaagaaggtataaaaaatatataacagatGTACAAACAAtgtcaaaacacaaaaatagaaGGGCTAAAGGGAAGAAGAAGATGGCGAGCTCTTGGCACTTTGCCAGAATCAGGAGCTGCGTTTTGTTGCATTCAAGCTTGCTgccccattctctctctctctctctctctcatccataTTTCACTTGATTCACTCTTTTCTGCACTTTATTCTTATTTGCTAATGAGCAGGCCCCCCACCCAGTGCAGCTTACAGGCAAACCACCGTCGGAGGGGACAAAAGTATTCGTAATGAAACTGCTCAAACTCAGGTGTTTGGCGGATATCACGCAAAAAGGCCACATCCAGATCAGATTCTGTGAgaatgatgaggaggaggagcaaaACAAAAAGGAGTCCGATGGTTACGAGGAGCAAACGGAGGACGCTTAGGACAAACTTGTTCACGTCTTCCACCTCTGTGACGACAGGCACCACCAGTGCAGTGCTTGCTGTTGTTCCTGGTTCACCTGGTTCTCTCACCACCACTGTGCTCTGCTCagcctccttctcctcctcagtACTGCAGGGAGTTCCATTAGCATGACGTGTGGTGACAGCAGCTGGCTCCGGACTGAGCTCGGTCACTGGTGTAGGCAGAACGCTGTCCGATGGGCTGTAGTTGTCCTCAGCAATTACTTCTGCAACATTGCCATACTCATTCACCTGGCTGTGGGAATGAGGTATGAACGAATCGCTATGTGAGATCGAATGCACAGGTGTGGAGTGTGCACTGTCCCTCAGTGATTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119127 True 2379 lncRNA 0.38 2 17087954 17090706

Neighbor

gene id symbol gene type direction distance location
blm blm coding upstream 22135 17041357 ~ 17065819 (+)
ppp1r15b LOC108263894 coding upstream 103978 16978935 ~ 16983976 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 159312 16838875 ~ 16928642 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 271682 16764695 ~ 16816272 (+)
LOC113534621 NA coding upstream 576975 16500760 ~ 16510979 (+)
slc28a1 LOC108263923 coding downstream 272419 17363125 ~ 17378340 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 439728 17530434 ~ 17541653 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding downstream 491177 17581883 ~ 17602174 (+)
reln reln coding downstream 670811 17761517 ~ 18188484 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding downstream 1133355 18224061 ~ 18241609 (+)
LOC117597540 NA non-coding upstream 48678 17038051 ~ 17039276 (+)
G100499 NA non-coding upstream 63726 17010715 ~ 17024228 (+)
G100480 NA non-coding upstream 115716 16971830 ~ 16972238 (+)
G100379 NA non-coding upstream 148226 16938735 ~ 16939728 (+)
G100370 NA non-coding upstream 264852 16822368 ~ 16823102 (+)
G100532 NA non-coding downstream 60247 17150953 ~ 17152232 (+)
G100533 NA non-coding downstream 64000 17154706 ~ 17154971 (+)
G100544 NA non-coding downstream 85452 17176158 ~ 17176370 (+)
G100846 NA non-coding downstream 899696 17990402 ~ 18068569 (+)
G101183 NA non-coding downstream 1114386 18205092 ~ 18205814 (+)
rgma NA other upstream 407161 16657601 ~ 16680793 (+)
G100345 NA other upstream 486887 16600257 ~ 16601067 (+)
G100306 NA other upstream 738167 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1741808 15300482 ~ 15346146 (+)
G99341 synm other upstream 2563474 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 309720 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 398840 17489546 ~ 17493092 (+)
G101403 NA other downstream 1460740 18551446 ~ 18551724 (+)
G101419 NA other downstream 1508008 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1647637 18738343 ~ 18739998 (+)

Expression


Co-expression Network